Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11953g00001 ATGGTCAACCTATGCAAGAGATATACAAAGGAGTTTGATTATTTGCAATATGAAGATTCGTTTCTCTACTCATTCCTCCGTTTGATTAACAATAATCATAGCCACCCACCCACCCACCCAACGCCCCCACAAAAGATACGTACATCTCCTCCCCTCACAGCTTTATTCTCTGAGATGGGTCTTCATCAGGATGCCAATAGCTCAGGCCTTCACCTCGTTCTAGGGTTATCTTTGACTGCTACCACAAAGGAAAGTACCACTCCGTCCACCAAGCCTGAGAATCATCTTTGTGTTATTAAGCCAACGCCAACGAAGCCTTATTCGTCGAATGAACCATCTTTAACGTTGGGTCTGTCCGGTGAGAGTTACCACGTGGCCAAGCAAGTGCCCAGAAACAACAACAACAACAACAAAGTTTATTGTGATGACCCTCTTGACTTGTCTAGACAAGCATCACCTCATAGCGTGGTTTCGTCTTTCTCAAGTGGGAGGGTCGTCAAGAGGGAGAGGGACCTTAGCTGTGAAGAAATAGAGGTCGAGGCAGAAGAAAGGGTTTCTTCAAGAGTCAGTGACGAAGACGAAGACGGCACCAATGCTAGAAAGAAGCTCAGGCTCACCAAAGAACAATCCGCACTGCTAGAGGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAACAAGCTTTAGCCAGACAGTTAAATCTACGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGTGAATCGTTGACGGACGAAAACAGGAGGCTAAAGAAGGAGCTGCAAGAGCTGAAGGCGCTGAAACTGGCTCAGCCCCTGTACATGCCTATGCCTGCTGCCACACTCACCATGTGCCCTTCTTGTGAGAGGCTCGGTGGCGTCAATGATAACGGTTCCAATAAAAGCCCCTTCTCCTTGGCTCCCAAACCCCACTTCTACAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 1038 0.4778 MVNLCKRYTKEFDYLQYEDSFLYSFLRLINNNHSHPPTHPTPPQKIRTSPPLTALFSEMGLHQDANSSGLHLVLGLSLTATTKESTTPSTKPENHLCVIKPTPTKPYSSNEPSLTLGLSGESYHVAKQVPRNNNNNNKVYCDDPLDLSRQASPHSVVSSFSSGRVVKRERDLSCEEIEVEAEERVSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVNDNGSNKSPFSLAPKPHFYNPFANPSAAC 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11953g00001 345 SMART halz 256 299 IPR003106 GO:0006355|GO:0043565
Mupr11953g00001 345 SMART HOX_1 198 260 IPR001356 GO:0003677
Mupr11953g00001 345 ProSitePatterns 'Homeobox' domain signature. 231 254 IPR017970 GO:0000981|GO:0006355
Mupr11953g00001 345 Coils Coil 262 292 - -
Mupr11953g00001 345 MobiDBLite consensus disorder prediction 83 113 - -
Mupr11953g00001 345 ProSiteProfiles 'Homeobox' domain profile. 196 256 IPR001356 GO:0003677
Mupr11953g00001 345 CDD homeodomain 200 257 IPR001356 GO:0003677
Mupr11953g00001 345 FunFam Homeobox-leucine zipper protein 18 184 261 - -
Mupr11953g00001 345 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 74 325 - -
Mupr11953g00001 345 Pfam Homeobox associated leucine zipper 256 290 IPR003106 GO:0006355|GO:0043565
Mupr11953g00001 345 Gene3D - 204 254 - -
Mupr11953g00001 345 Pfam Homeodomain 200 254 IPR001356 GO:0003677
Mupr11953g00001 345 SUPERFAMILY Homeodomain-like 191 257 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11953g00001 Mupr-Chr11953 1312 3040 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11953g00001 59 345 Homeobox Transcription Factor Family AT4G37790 59.211 4.20e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mupr11953g00001 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11953g00001 K09338 - gmx:100784129 464.151