Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11948g00001 ATGGTCGCCAAGGAGAAAAACGTGACCATCAAGACCAAGAAGCCCCACAATGCCGACGAGGTTCACTTCCGCGGCGTCCGGAAGCGGCCCTGGGGCCGCTATGCCGCCGAGATCCGCGACCCCGCCAAGAAAACCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAAGAAGCCGCCAGAGCCTACGACACCGCCGCTCGCAACTTCCGCGGCCCAAAGGCCAAGACAAACTTCCCCGTCCCCCACCCCACAAACAACAACAATAACAACGTGATCGACAGCCCTAGCCAGAGCAGCACCGTGGAGTCCTCCACCCCGGAGCGTGACCCCACGCGCCGCCCCGATAACCTCATGGACCGCTTCCCCTTCCTCTCGCTGCAGCCGCAACTCCTCGTAACTCCCGTCGCCCCCCTGCGCCCGGTTTTCTTCCTCGACCGGTCTGAGTTTCTCGCCCAGCGCTACCCCGTCCGGTTCGAACCCGGTCCGGTCGAGTTTACCTCCGGTGGGACCCAGAGCGACTCCGATTCCTCCTCCGTCGTTGATTGCCGGCCCAAAAGAGAGCTCAATCTCGATCTTAACTTGGCTCCACCTCTGGACGCTTAA 603 0.6302 MVAKEKNVTIKTKKPHNADEVHFRGVRKRPWGRYAAEIRDPAKKTRVWLGTFDTAEEAARAYDTAARNFRGPKAKTNFPVPHPTNNNNNNVIDSPSQSSTVESSTPERDPTRRPDNLMDRFPFLSLQPQLLVTPVAPLRPVFFLDRSEFLAQRYPVRFEPGPVEFTSGGTQSDSDSSSVVDCRPKRELNLDLNLAPPLDA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11948g00001 200 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Mupr11948g00001 200 MobiDBLite consensus disorder prediction 68 118 - -
Mupr11948g00001 200 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Mupr11948g00001 200 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 151 - -
Mupr11948g00001 200 MobiDBLite consensus disorder prediction 1 24 - -
Mupr11948g00001 200 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Mupr11948g00001 200 MobiDBLite consensus disorder prediction 79 105 - -
Mupr11948g00001 200 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Mupr11948g00001 200 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Mupr11948g00001 200 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Mupr11948g00001 200 MobiDBLite consensus disorder prediction 160 182 - -
Mupr11948g00001 200 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Mupr11948g00001 200 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Mupr11948g00001 200 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11948g00001 Mupr-Chr11948 5683 6285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11948g00001 6 198 AP2-EREBP Transcription Factor Family AT5G44210 51.741 2.63e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mupr11948g00001 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11948g00001 K09286 - gmx:100775465 234.187