Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11916g00001 ATGGAACCAAAACTGATTGAGGATTTAGCGTCAAGAAAAGTTTGTTATAGAAAAGGACGGACAAGTTTGTTGAAGAAGGTGAAGGAGCTTACCACCCTTTGTGATGTAGATGCATGTGCAATCGTCTATGGTCCTGGTGATAAGGTGCCTCTTGTGTGGCCATCCCGTGACAAGACTAAAGAGCTTCTTGACAAGTTTGAGAATGCTCCATTGTCGGATCGGAGGAGAAAAAACGTTAACCAACAGGTTTATATTGAGCAGAAGAATAAAAAGATTGAAAACCAAATTGTCAAGCTGAAGGAGAAGAATGTTGAGAAAGACATGTCAAATTTCATGCATAAAATCCATGATGATGGTAAGTCTCTATCTGATTTTGATGCTAGTGATTTATGTCGTTTACTTTATTACGTGGAGAGGAAACTCGAGCGTGTTAGAGTGAAAGCTGCTCATTCTCAACAGCAGTTATCTCCTAATCCTCCAACACCGCCAGTTTCTTTACAGAATGATATTGATTTTTGGGCTAACTTAGATGAACAAGTATTAGAACAATCGTTCTTAGATTTGTTGAAAGAAGATGGCATGATGAATAGTGGTTTTGATAACAATATAGGGAGCAACATGGGGCTACCACCATTTCCACAACATCTTGGTGATGTTGATATGGTGCTGCCTCAAGACAATATTGAAGGTTTCAATCTTGGTGATATTGACATGGTGTTGCCTCCGGGCAATTTTGGAGGCCTCATTGATGAAAGTGGTTTAGAGTCTGGGGTGTTGCCTCAAGGCAATTTTATTGATCTCAATGGTCATAGTGATTCAGGGCTTTTATATGGAAGCTCTTCTAGTGAAATTGGAGGCAGTGACATATGGCCAATTTATGGAAATTTTGGAGGCACAATTGGTGGAAGTGATATGATGTTGCCCTTCAGCAACTTTGAAGGCAACATTTGTGGAACTTTCATGGGAGGGTCCATTAACAATATAGGGTTATGGAGTCATCAAAGAAACTTTGGAGTGGGGAGTTCCAATCCAAACTTTGTTGGCACTAATAAAAGCGCTAATGCTACAACCAGTGGTTGTCGTGTTGATGTTTTGTTTTTACAATGA 1107 0.3984 MEPKLIEDLASRKVCYRKGRTSLLKKVKELTTLCDVDACAIVYGPGDKVPLVWPSRDKTKELLDKFENAPLSDRRRKNVNQQVYIEQKNKKIENQIVKLKEKNVEKDMSNFMHKIHDDGKSLSDFDASDLCRLLYYVERKLERVRVKAAHSQQQLSPNPPTPPVSLQNDIDFWANLDEQVLEQSFLDLLKEDGMMNSGFDNNIGSNMGLPPFPQHLGDVDMVLPQDNIEGFNLGDIDMVLPPGNFGGLIDESGLESGVLPQGNFIDLNGHSDSGLLYGSSSSEIGGSDIWPIYGNFGGTIGGSDMMLPFSNFEGNICGTFMGGSINNIGLWSHQRNFGVGSSNPNFVGTNKSANATTSGCRVDVLFLQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11916g00001 368 CDD MADS_SRF_like 4 80 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr11916g00001 368 Coils Coil 82 105 - -
Mupr11916g00001 368 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mupr11916g00001 368 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 164 - -
Mupr11916g00001 368 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Mupr11916g00001 368 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Mupr11916g00001 368 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 6 49 IPR002100 GO:0003677|GO:0046983
Mupr11916g00001 368 Gene3D - 8 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11916g00001 Mupr-Chr11916 12771 14277 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11916g00001 1 141 Type I MADS-box Gene Family AT1G65300 34.043 3.28e-23 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr11916g00001 SRF-TF 4.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11916g00001 - - gmx:106798339 414.075