Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11899g00001 ATGCATTTTACCGCGCCTTCTCTTCTCTTTCTCTTTCTGCAACCAAACCAAATTAGGGTTTCTCGATCTTCTTCATTCCTCACTCCTCTCACCGTTTTAGGGTTTTACCTTCCCAACACGACTCAGGAGGAGTTTTCCCTTGGAGTTTTGTGGACAGCTGTTGACAACAAGAATCTGTGTTTGACTATGCGAACTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAAAATGCAGGTTCCGGTTCTTCTGCTAACAATGGGGGAACTGGACCAACTGGCAGCACTTCAGCTCCTTCGCGACCGGTTTATGTTCCTCCTCATCTGAGGAATCGCCAGCCATCAGCAGAATCCCCTGCTCCAGCATATAGTGGCCCGTCTTCTGGTTCTGCTGGCTCTAGTTCTGGTGCTGGTAATTCTGGATCACGTTGGCCTGCACCCAGAAATGATTATCGTTCCGGGCATGGTGGTGGTGGTCGCCACGGTGGATGGGGAAACAGAACTGGTGGGTGGGATCGTGGCAGGGAGCGTGAAGTCAATCCCTTTGAAGAAGAGGATAATGCTGAAGAGGCATTTACTGAGCAGGAGAATACTGGAATAAATTTTGATGCATATGATGACATTCCAGTGGAGACCAGTGGTGAAAATGTACCCCCACCTGTGAATACGTTTGCAGAGATTGACTTGGGTGAAGCACTTAATCATAATATAAGAAGGTGCAGATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATTCCAATATCCCTAGCTGGACGGGATTTGATGGCTTGTGCGCAAACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCCATTATCAGTGGAATCATGAGGGGCCAACCTGTGCAGAGGCCACCTCGTGGGGTGCATACTGTGTATCCGCTTGCACTTGTTCTTTCTCCAACTAGGGAACTATCAATGCAAATACATGAAGAGGCTAAGAAATTTTCATACCAAACTGGGGTTAGGGTGGTTGTTGCTTACGGTGGAGCACCAATAAACCAGCAGGCCTTTCTCACTCTGATGTCATTGGACCGAGATGATCCACTGTTTCCAGCGACCCATTCTCTGATTTCCAATGATGTAGCCTCT 1116 0.483 MHFTAPSLLFLFLQPNQIRVSRSSSFLTPLTVLGFYLPNTTQEEFSLGVLWTAVDNKNLCLTMRTSWADLAANSAAENAGSGSSANNGGTGPTGSTSAPSRPVYVPPHLRNRQPSAESPAPAYSGPSSGSAGSSSGAGNSGSRWPAPRNDYRSGHGGGGRHGGWGNRTGGWDRGREREVNPFEEEDNAEEAFTEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGEALNHNIRRCRYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVHTVYPLALVLSPTRELSMQIHEEAKKFSYQTGVRVVVAYGGAPINQQAFLTLMSLDRDDPLFPATHSLISNDVAS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11899g00001 372 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 372 IPR014001 -
Mupr11899g00001 372 SMART ultradead3 241 372 IPR014001 -
Mupr11899g00001 372 MobiDBLite consensus disorder prediction 77 199 - -
Mupr11899g00001 372 Pfam DEAD/DEAH box helicase 246 345 IPR011545 GO:0003676|GO:0005524
Mupr11899g00001 372 Gene3D - 177 356 IPR027417 -
Mupr11899g00001 372 MobiDBLite consensus disorder prediction 117 142 - -
Mupr11899g00001 372 MobiDBLite consensus disorder prediction 77 100 - -
Mupr11899g00001 372 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
Mupr11899g00001 372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 347 IPR027417 -
Mupr11899g00001 372 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 188 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11899g00001 Mupr-Chr11899 170 2571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11899g00001 211 343 Eukaryotic Initiation Factors Gene Family AT1G72730 30.075 9.46e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11899g00001 K11594 - ccaj:109791229 422.55