Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11891g00003 ATGGATCAGATAACGGATTCAGAAATGGATCAACAGAGACAAGGCTATCTTCATTCTGAACCCTGTATCCTTATGAGAGGAACCCCCAGCATCTCGCAGCCTAATAATATTCATGCAATAGTGAGAGCTTCTGGGAACACAACTAATGTTGATTCTCACTTTTTGCCAGATGCTTATGACAATGCTAGGGTGTACGGGGTTACACAATACAATGGCATTCAGCCTCCACATAATCTTGATATGGGCGTACCAGCTGCAGCCAACATATATTATTCTGGCATTAATCCTTCTTCTAGTACTGGTGTTTTTCCGCTGCCTCTAAATCACCGAGCATCTGATCAGTTGCCTGGTTCAAGCACATTTGGTGTTGCTGGAGTTTCTTCAGATAATTATGGGAGAAGTTCTGGTTTCATTGATGATGTTAGAGGTCCATACAAAAGAAAAACTGCTGAAGGGATTAGAGGAAGTTACCAGTATTTGAATGCTTCATCTAGTTCTTCAATTGCTCCCCCTAATGCAAGACATGCTGATGGGGTTGCTATGATGGATACTGCATCATTTTCATTCCGCATCCCATCACTTGTGGAAGTAGGACCACATGGTAATCCATGGAGCAGGACAGGTGAGTCTATTATGGTGCATGACCATAATCATTTGATCCATGGAAACTATTTAGGGCAACACTTTCAGCCAGCTGCTCCTCCCTGGTTGGACCAGCAGTTGAATAGTAATAATAATGATGGCCATACTACACCCTGGATTCAGTCTCTTCCAATGCCTTATGTACAAGTCTGTCTGACTATCCCTCCATATTATTTTCCAGCACCCAGTATAAATGCCGGTTCATTAGAGAGTGCAAATATGGGTTTGCAGAGATATCATGATCCACCTGGAAACCGAAATGGCCTCAGGTTTCCTCTCCCTCTTCCTGTCAACCAACAGCACCATAATTATCATCATCCAGCACTGCCTATGCAAGGAGTAAGAGGCCACAACATCAACTTTCACCCTGCAGTAACTGCAGCTTCATTTAGAGTTCCAACAAATCCTTCACGCAGTCTTACAATCCCAGCACCAACTGGTTTTGATATGGGTCCTAGGCATATTGGCCCCGCACCATCATCTGGCCTCCGGATTTACCGACCTCATAGAGGAGCCATGCCTGAGACAACTCTTGGACACCGAGGTCTCCCCCCTGTAGGCTTCCTTCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATTTAGTTGACCATCACCGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTCCTTGCATTGGGTGAGCGCATTGGCAATGTAAGCACTGGTTTATCAGAGGAAACAATTAGAACTCAAATGAAGACAAAATCTTATTTAACGAGTGCTACTGCTATTAATCTGGAGGAGACAGCTTGTGATGATCAGGAAACAGATTCTTGTATAATATGTCAGGAAGAATTTAAGAACCAAGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATATCATGCAGATTGCTTAAGGAAATGGTTGGTTGTGAAAAATGTGTGCCCCATATGCAAATCAGAAGCTTTGAGCACTACTACTACTTCAGGAAGGAAGGATGTATAG 1629 0.4322 MDQITDSEMDQQRQGYLHSEPCILMRGTPSISQPNNIHAIVRASGNTTNVDSHFLPDAYDNARVYGVTQYNGIQPPHNLDMGVPAAANIYYSGINPSSSTGVFPLPLNHRASDQLPGSSTFGVAGVSSDNYGRSSGFIDDVRGPYKRKTAEGIRGSYQYLNASSSSSIAPPNARHADGVAMMDTASFSFRIPSLVEVGPHGNPWSRTGESIMVHDHNHLIHGNYLGQHFQPAAPPWLDQQLNSNNNDGHTTPWIQSLPMPYVQVCLTIPPYYFPAPSINAGSLESANMGLQRYHDPPGNRNGLRFPLPLPVNQQHHNYHHPALPMQGVRGHNINFHPAVTAASFRVPTNPSRSLTIPAPTGFDMGPRHIGPAPSSGLRIYRPHRGAMPETTLGHRGLPPVGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETIRTQMKTKSYLTSATAINLEETACDDQETDSCIICQEEFKNQEKIGVLRCEHEYHADCLRKWLVVKNVCPICKSEALSTTTTSGRKDV 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11891g00003 542 FunFam E3 ubiquitin ligase BIG BROTHER 446 531 - -
Mupr11891g00003 542 SMART ring_2 486 526 IPR001841 -
Mupr11891g00003 542 CDD RING-H2_RNF24-like 484 530 - -
Mupr11891g00003 542 Pfam Ring finger domain 484 527 IPR001841 -
Mupr11891g00003 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 126 532 IPR045191 GO:0061630
Mupr11891g00003 542 SUPERFAMILY RING/U-box 479 531 - -
Mupr11891g00003 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 448 531 IPR013083 -
Mupr11891g00003 542 ProSiteProfiles Zinc finger RING-type profile. 486 527 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11891g00003 Mupr-Chr11891 25264 27851 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11891g00003 403 533 C3H Transcription Factor Family AT2G15530 46.715 1.22e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11891g00003 K19041 - gmx:100800642 833.172