Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11890g00002 ATGTCGCATTCCACAAAACCCGTGTCCGAGTTAGGGCTCAGTGACCGGTTCCGCGACTCACTGAGTTGCTCAGACGCCAACAAGCCCGATTTTCGTGAACTAGATTTGGGTTCACCTGTTTCCACATTGCGGCCACGTCATCACCACAGTGCAGCCACGAGTAGTGGAAGTACTAGCAGTAGCGGCTCGACCGGTTCCGGTTCGGCCCAAACCGGATCCAAACTGGTTTCCAAGAAATCCCATTCCGGCGAGCTGTCTGGTTCCAGCGAGACTAATAGCCCTAACCGGACGCCCAAACCGGGTCACCGGAGATCCAATTCTGCTCAGAGTCAGAGATCCCCGTCTTCCTCTTCCTCCGCCGCCGTGAATTCGCCGCCGCTGAACGTTCTCCCTGCCGGGAACATTTGCCCGTCCGGGAGGGTTCTCAAGGCGACGGCGGTGGCGGCGAGCCGGAGCTCCAGGACTGATGTCTTGGGCTCCGGCACGGGGAATTACGGCCACGGGAGTATAATGCGCGGCGGAAAACCCGGCGGTGGAGGTGGCGGTGGTAACGCCGGCGATGCGGCGAGTGCGAGGATCGCCGGCGATTCAGGGAAGCGCGTGGATCCAGAGGAGGTTAAGAGAATGGGGAATGAAGAATACAAGAGAGGACGCTTTGCTGAGGCGTTGTGCCTTTATGATCGCGCAATTGCGATTTCTCCGGGCAATGCCGCTTACCGGAGCAACCGTGCGGCGGCGTTGACCGGCTTGGGACGGTTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGAAGGGCGCATCAGCGTTTGGCAATGCTATTTCTCAGGTTAGGACTGGTTGAGAATGCTAGGAAGCACCTTTGTTATTCTGGTCTGCAGCCGGATCCGTCTGAGTTGCAGAAATTGCAAATGGTGGAAAAGCATATCAGCAAATGCGCGGATGTACGGAGGATACGAGATTGGAAAAGTGTTCTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTCTCAAGCTACACCAGGTGGATGATGCTGAATCGAGTTTATCTCGGATTCCCAAAAGCGAGCAGCATCCTTGTTCCTTATCACAGGCAAGATTTTTTGGGATGTATTCTGAAGCTTATTGCTACTTTGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGTGGAGAAAGCTAGTCAGATTGACCCCCGAAACGTAGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTGGCTAGAGCTCGACTGCGCGGCAATGATCTTTTCAAATCAGAAAGATTCACGGAGGCATGCTCGGCATACGGGGAAGGTTTGAGGCTTGACCCTTCAAACTCTGTTCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGATGACTGCAATCAAGCTTTACGCATCCAACCAAATTACACGAAAGCCATTCTTAGAAGAGCTACCTCAAATAGCAAGCTAGAAAGGTGGGAAGAAGCAGTAAAGGATTATGAGCTCTTGCGGAGAGAACTACCGAATGACAATGAAGTTGCCGAAGCTCTGTTTCATGCGCAAGTAGCACTAAAGAAATCTCGCGGGGAAGAAGTACATAATTTAAAATTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGGGCTTCAATATCCTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCATCAAACTTACAATGCAAGAAAATTTCGCCATTCGTCGATGTACTATGTAGCCGCTATCCATCTATTAACTTCCACAAGGTGGATATTCAAGCAAGCCCCGCAGTTGCCACTGCTGAGAATGTTAGGATTGTACCAACCTTCAAGATCTACAAAAATGGAAGTCGAATGAAGGAAATTGTATGTCCTAGTCATGATATGTTGGAAAACTCCATTAGGCATTACAGCTTTGTGGAGTGGACTTGGGTGGTTGATGCAACTCAGAGCTCTTAG 2067 0.5051 MSHSTKPVSELGLSDRFRDSLSCSDANKPDFRELDLGSPVSTLRPRHHHSAATSSGSTSSSGSTGSGSAQTGSKLVSKKSHSGELSGSSETNSPNRTPKPGHRRSNSAQSQRSPSSSSSAAVNSPPLNVLPAGNICPSGRVLKATAVAASRSSRTDVLGSGTGNYGHGSIMRGGKPGGGGGGGNAGDAASARIAGDSGKRVDPEEVKRMGNEEYKRGRFAEALCLYDRAIAISPGNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLAMLFLRLGLVENARKHLCYSGLQPDPSELQKLQMVEKHISKCADVRRIRDWKSVLREVDAAVAAGADSCVQLFMCRAEALLKLHQVDDAESSLSRIPKSEQHPCSLSQARFFGMYSEAYCYFVRAQIEMAFGRFENAVTAVEKASQIDPRNVEVAVLLNNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIDDCNQALRIQPNYTKAILRRATSNSKLERWEEAVKDYELLRRELPNDNEVAEALFHAQVALKKSRGEEVHNLKFGGEVEDISGLEQFRASISLPGVSVVHFETASNLQCKKISPFVDVLCSRYPSINFHKVDIQASPAVATAENVRIVPTFKIYKNGSRMKEIVCPSHDMLENSIRHYSFVEWTWVVDATQSS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11890g00002 688 MobiDBLite consensus disorder prediction 149 209 - -
Mupr11890g00002 688 Pfam Tetratricopeptide repeat 477 508 IPR001440 GO:0005515
Mupr11890g00002 688 ProSiteProfiles TPR repeat profile. 395 428 IPR019734 GO:0005515
Mupr11890g00002 688 SMART tpr_5 203 236 IPR019734 GO:0005515
Mupr11890g00002 688 SMART tpr_5 441 474 IPR019734 GO:0005515
Mupr11890g00002 688 SMART tpr_5 509 542 IPR019734 GO:0005515
Mupr11890g00002 688 SMART tpr_5 347 380 IPR019734 GO:0005515
Mupr11890g00002 688 SMART tpr_5 395 428 IPR019734 GO:0005515
Mupr11890g00002 688 SMART tpr_5 237 270 IPR019734 GO:0005515
Mupr11890g00002 688 SMART tpr_5 475 508 IPR019734 GO:0005515
Mupr11890g00002 688 FunFam TPR repeat-containing thioredoxin TTL4 567 674 - -
Mupr11890g00002 688 MobiDBLite consensus disorder prediction 1 125 - -
Mupr11890g00002 688 SUPERFAMILY TPR-like 203 431 IPR011990 GO:0005515
Mupr11890g00002 688 Pfam Thioredoxin 585 670 IPR013766 -
Mupr11890g00002 688 Gene3D Tetratricopeptide repeat domain 201 561 IPR011990 GO:0005515
Mupr11890g00002 688 Gene3D Glutaredoxin 568 675 - -
Mupr11890g00002 688 CDD TRX_family 580 670 - -
Mupr11890g00002 688 Pfam Tetratricopeptide repeat 209 269 - -
Mupr11890g00002 688 MobiDBLite consensus disorder prediction 47 125 - -
Mupr11890g00002 688 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 18 672 IPR044534 -
Mupr11890g00002 688 SUPERFAMILY Thioredoxin-like 478 675 IPR036249 -
Mupr11890g00002 688 ProSiteProfiles TPR repeat profile. 475 508 IPR019734 GO:0005515
Mupr11890g00002 688 ProSiteProfiles TPR repeat profile. 203 236 IPR019734 GO:0005515
Mupr11890g00002 688 Pfam Tetratricopeptide repeat 397 428 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11890g00002 Mupr-Chr11890 13035 16994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11890g00002 440 581 U-box Gene Family AT3G07370 28.652 1.84e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11890g00002 - - gmx:100805790 1087.4