Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11878g00003 ATGGCTCTTCATCACCGCTTGATGCTTGACACAACAAATTCAAGCTCACCTGCACCAGCTAGCATGAATAGGACAAGAGAGACTTTCACAGGTGAGGCAAATTTTGACACCAACATGGTGATTATTTTGGCTGCGTTGCTTTGTGCACTTATATGTGCTTTGGGGCTGAACTCAATTGTGCGGTGTGCTCTAAGATGTAGCCGCAGGTTTGCTTTTGAGACCCCAGAGGAGACTGCGGCTCGTTTGGTGGCAAAAGGCCTTAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTAGTGTTAGTATTGCAGCCACAGATTGTCCAATTTGCCTTGGGGAGTTTGTGGATGGGGAGAAAGTAAGAGTGTTGCCAAAATGTAACCATGGATTCCATGTAAGACAATCTTTGCTTGAGCAACCAACTATTTCTGGAGCTGCAGCTGCAGGAACAAGTCGCCATGTAGAGAATGCCTTAGCTGTGGTTGTGGAAGAGAAACCTGGTGAGTGGAAAGCAAATGAGAAGAAAAGAGAACCATTGGCCAAGGCAATTTGA 567 0.4568 MALHHRLMLDTTNSSSPAPASMNRTRETFTGEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGSVSIAATDCPICLGEFVDGEKVRVLPKCNHGFHVRQSLLEQPTISGAAAAGTSRHVENALAVVVEEKPGEWKANEKKREPLAKAI 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11878g00003 188 MobiDBLite consensus disorder prediction 1 23 - -
Mupr11878g00003 188 Pfam RING-like zinc finger 111 137 IPR001841 -
Mupr11878g00003 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 143 IPR013083 -
Mupr11878g00003 188 SUPERFAMILY RING/U-box 111 137 - -
Mupr11878g00003 188 PANTHER RING-H2 FINGER PROTEIN ATL78 10 138 IPR044602 GO:0016567|GO:0016740
Mupr11878g00003 188 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11878g00003 Mupr-Chr11878 23058 25797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11878g00003 6 138 C3H Transcription Factor Family AT3G10910 56.738 9.02e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11878g00003 - K19040 gmx:100787273 278.485