Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11870g00007 GGACGAAAGTTGACGCAAAGTGAAGTTATAGTATGCAAAGAGAAAGGTAAGATCGATAACAGAAAAGGGAAAATGACGATGGACGACGATAGCTCCATTTATGTAGGGGGTCTCCCCTATGACGCCACCGAAGAAACCATTCGCACCGTCTTTAATTTGTATGGTGCCATTCTTGATGTTAAGATTATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTAACTTTCACAAATCCTAGGTCAGCAATCGACGCCATCAACGACATGAATGGCAGAACCATTGACGGGCGTGTGGTTAAAGTTAATGGGGTGAGGGCTCGTGGGGGCAGGACAAATTTTGGCAGAGAACGTTATTATTATCACAATGATGAGAGGAATGGGGATTGGGATCGCGGTAGAGATCGAGAGCGCATTTATGATCATGATAATAATGATAGGGATGGATATAGGGATGGATATAGGAATCGGAGCAGTGATTGGAGTCGAGACCGTGATAGGTCTCGAGACCATGATCAAGACAGGGATAGAAGATTTGAACATATGCATGATTATGAACAAGCTAGAGAACCTATGCTAGATAATGACTGGAGCCGAGAGGATGATAGAGTTGAAAATGAAAAAGAACACAGCAGGGGGTATGGTGGAGATGTGGAGAGAGACCACAACTTAGATTTGGATACAAACAGGAAGGTGGATAGGACCAGTGATCCTGATAAAAGTTTTGATGAGGATAGAAAAGATCAGTCAAGGAGAAACAATGACTTGAATGTTACAAATCAACATAGCATGGATCTTTCATCAGATTCAACTGGTACTCACAATGATCAGGTAGAAGCTCAATTGGAGAGGTCAACTCAACAGCTTGATCAACTAAAAAAGGAGGTTTCTCAGATGGAAGAGGGATTGGAAGAGAAAAGACTCCATGTTAAGGAATTACAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCAATGCGAAGAAAAACTCTTCATATCGTCAGATGCAGTTGATGAAGCTGCATAAATGTTTTCTGCAAGTGAAAGATTTCACAGAAAGACTTAAAACTGGTGAAAAAGAACTTCAGGCTCTAATTGATACAGCAATGTCAGAGATTGATGGTGATGGATTAAAGGACGGACAACTCACCAATGGAAATCTTGATGGTAGATAG 1179 0.4156 GRKLTQSEVIVCKEKGKIDNRKGKMTMDDDSSIYVGGLPYDATEETIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRARGGRTNFGRERYYYHNDERNGDWDRGRDRERIYDHDNNDRDGYRDGYRNRSSDWSRDRDRSRDHDQDRDRRFEHMHDYEQAREPMLDNDWSREDDRVENEKEHSRGYGGDVERDHNLDLDTNRKVDRTSDPDKSFDEDRKDQSRRNNDLNVTNQHSMDLSSDSTGTHNDQVEAQLERSTQQLDQLKKEVSQMEEGLEEKRLHVKELQKQSKKLEDALINAKKNSSYRQMQLMKLHKCFLQVKDFTERLKTGEKELQALIDTAMSEIDGDGLKDGQLTNGNLDGR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11870g00007 392 CDD RRM_SF 33 104 - -
Mupr11870g00007 392 SUPERFAMILY RNA-binding domain, RBD 26 135 IPR035979 GO:0003676
Mupr11870g00007 392 Gene3D - 6 121 IPR012677 -
Mupr11870g00007 392 MobiDBLite consensus disorder prediction 255 277 - -
Mupr11870g00007 392 Coils Coil 276 331 - -
Mupr11870g00007 392 PANTHER GEO13361P1-RELATED 28 177 - -
Mupr11870g00007 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 108 IPR000504 GO:0003723
Mupr11870g00007 392 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 223 - -
Mupr11870g00007 392 Coils Coil 349 369 - -
Mupr11870g00007 392 MobiDBLite consensus disorder prediction 132 254 - -
Mupr11870g00007 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 102 IPR000504 GO:0003723
Mupr11870g00007 392 MobiDBLite consensus disorder prediction 132 277 - -
Mupr11870g00007 392 SMART rrm1_1 32 104 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11870g00007 Mupr-Chr11870 16587 20289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11870g00007 31 103 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 7.66e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11870g00007 - - gmx:100816804 629.017