Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11793g00001 ATGCCTACTAATCATCGGTGTGAAAGAATTATGGGTCGTCGTAAGATTGAGATTGCGGAGGTGAAGGACCCCAACACGAGGCAAGTTACATTTTCCAAGCGTCGAACGGGTTTATTTAAAAAGGCAAATGAATTGTCCATCTTGTGTGGAGCAGAAGTTGGTATTGTTGTGTTCTCCCCAGGAGACAAGCCTTACTCTTTTGGGCATCCAAGTGTTGAAGTTGTTGCAGACAAATTTCTTCAACAAAATGTTACCCAACGAAGTGGTGTCCAGGCATCTGATGAAGTTAGTGACATAGATAGGTTGAATCAACAACTATCCGATGTTCAAGCTCAAATACGCCAGGAAGAAAAGAAGGGCGCAGAGCTTCATGAGCGATTCAAACAACATCAACTCGCACAACTCTCTAGATATAAAGAGTTGCAAGGTTCATATTTAGAGATCCAGCGCAAGGTCAAGGACTATCTTGATGCAATCGAGGTGTCAGAGTCTATGATGCTCCTTGCACAAGAACCAGTTGTTAGAATAACAAAACATGTTACTACAAAGAGAAGAAGAAGAAGAAATTGA 570 0.4175 MPTNHRCERIMGRRKIEIAEVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVGIVVFSPGDKPYSFGHPSVEVVADKFLQQNVTQRSGVQASDEVSDIDRLNQQLSDVQAQIRQEEKKGAELHERFKQHQLAQLSRYKELQGSYLEIQRKVKDYLDAIEVSESMMLLAQEPVVRITKHVTTKRRRRRN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11793g00001 189 PANTHER MADS BOX PROTEIN 13 149 - -
Mupr11793g00001 189 SUPERFAMILY SRF-like 11 86 IPR036879 GO:0003677|GO:0046983
Mupr11793g00001 189 Coils Coil 92 126 - -
Mupr11793g00001 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Mupr11793g00001 189 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Mupr11793g00001 189 CDD MADS_MEF2_like 12 83 IPR033896 GO:0000977|GO:0045944
Mupr11793g00001 189 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Mupr11793g00001 189 Gene3D - 24 95 IPR036879 GO:0003677|GO:0046983
Mupr11793g00001 189 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Mupr11793g00001 189 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Mupr11793g00001 189 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Mupr11793g00001 189 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11793g00001 Mupr-Chr11793 4082 5112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11793g00001 11 170 Type I MADS-box Gene Family AT2G34440 40.571 3.89e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr11793g00001 SRF-TF 9.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11793g00001 - - gmx:100791127 233.032