Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1178g00002 ATGGCGGCTGAGTCTCAGCTTCCTGACCACTTCAAGTGTCCCATTTCCCTCGAAATCATGTCCGACCCCGTCATCCTCTCTTCCGGCCACACATTCGACCGTTCCTCCATCCAACGCTGGCTCGACGCCGGCCACCGTACCTGCCCAATTACCAAACTACCCCTCCCCGAACACGCTTCTCTCATCCCCAACCACGCCCTCCGAAGCTTAATTTCCAACTATGCTCCCATCTCCCCTCTCCACTCACACTCACATTCACATTCACTCACACACCCCCAAACCCTAATCTCCACCCTCACCTCTCCCTCTTCCACACTCCCCTCCAAGCTCGACGCGCTCCGCATCCTCACGCGCCTCTCCGACGCCGACTCCCTCCTCCGCCGCCGCCTCTCCGACTCCGCCCTCGTCCCCGCCCTCCTGGCCTGCGTCGACGCCCCCCACGACGCCCTCCGCCACCGCGCCCTCTCCCTCCTCCTCATCCTCTCCCTCGACGACGACACCAAGGTCGGCCTCGTTGCCGAGGGTGTCCTCGCCCGCCTCGTCGCCCTCCTCGCCGCCGCCGCCCCTTCCGACTGCCGCGCCCTCGCCGCCACCCTCCTCACCAGCCTGGCCGTCCTTCACGTCAACAAGGCCACCATTGGAGCCTTCCCCCGCGCCATTCACGCCCTCGTCTCCCTCCTCCGCGACGGCAAGCCCAGGGAACAAAAGGAAGCGGCCACCGCGCTCTACGCCGTCTGCTCCTTCCCCGATAACCGGCGACGGGCGGTGGAGTGTGGCGCCGTTCCCGTTCTGCTTCGAATCGCGGATTCTGGACTCGAGAGAAGCGTTGAGGTTATTGGGGTTTTGGCGAAGTGTAAGGAAGGGAGGGAGCAGATGGAACGGTATCGGGGTTGTGTGCACATTCTGGCTCGCATGTTGAGGAACGGAAGCGCCAGGGCAGTTCAGTATGCTCTTATGTCTCTCTATTCACTCTGTTCTCACAGCGAGGGAACTGTTCTCGAGGCCTTAAGAGATGGGGTTTTGGAAATTTCTCAAGGTTTGCTGCACGATGATAATGCCAAGCTACCTCAGTACCTCCTGTACAAAATGAAAGATCAATTTTTTGTTGTCATCATAGGTTTTTCTCTTATATAA 1134 0.5996 MAAESQLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPEHASLIPNHALRSLISNYAPISPLHSHSHSHSLTHPQTLISTLTSPSSTLPSKLDALRILTRLSDADSLLRRRLSDSALVPALLACVDAPHDALRHRALSLLLILSLDDDTKVGLVAEGVLARLVALLAAAAPSDCRALAATLLTSLAVLHVNKATIGAFPRAIHALVSLLRDGKPREQKEAATALYAVCSFPDNRRRAVECGAVPVLLRIADSGLERSVEVIGVLAKCKEGREQMERYRGCVHILARMLRNGSARAVQYALMSLYSLCSHSEGTVLEALRDGVLEISQGLLHDDNAKLPQYLLYKMKDQFFVVIIGFSLI 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1178g00002 377 SMART arm_5 285 326 IPR000225 GO:0005515
Mupr1178g00002 377 SMART arm_5 164 205 IPR000225 GO:0005515
Mupr1178g00002 377 SMART arm_5 123 163 IPR000225 GO:0005515
Mupr1178g00002 377 SMART arm_5 209 247 IPR000225 GO:0005515
Mupr1178g00002 377 SMART Ubox_2 10 74 IPR003613 GO:0004842|GO:0016567
Mupr1178g00002 377 CDD RING-Ubox_PUB 8 55 IPR045210 -
Mupr1178g00002 377 Gene3D - 276 362 IPR011989 -
Mupr1178g00002 377 SUPERFAMILY ARM repeat 94 353 IPR016024 -
Mupr1178g00002 377 ProSiteProfiles U-box domain profile. 6 81 IPR003613 GO:0004842|GO:0016567
Mupr1178g00002 377 FunFam RING-type E3 ubiquitin transferase 6 78 - -
Mupr1178g00002 377 Gene3D - 80 275 IPR011989 -
Mupr1178g00002 377 Pfam U-box domain 8 74 IPR003613 GO:0004842|GO:0016567
Mupr1178g00002 377 SUPERFAMILY RING/U-box 5 74 - -
Mupr1178g00002 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 76 IPR013083 -
Mupr1178g00002 377 PANTHER U BOX DOMAIN-CONTAINING 7 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1178g00002 Mupr-Chr1178 27607 31245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1178g00002 7 355 U-box Gene Family AT4G21350 58.028 2.54e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1178g00002 - - gmx:100796272 475.707