LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr11715g00002	ATGACAAATGTAGGACAGGGTAATAAGAGAAGCAAGAAATTGTTGCTTGTCACAAAAAGGAGCATTAGAATTAGTGCACCTCTTTCCAACGTGTCCACATGCGCCTTCTTGTTTCGTCCGGTCAGGCTCAGTGATATTAAAAGAACTAAACGAAAGAAAGACATTGAGAAAAAAAAAAGGTGCAAGGAACCGTCCAAAGGAGAGGTGAGAGCTCAGCTCCCCACACAGCACGGCACAATATCCATGGTGTCCAAACCTACCGACTCTGCTTCCAAACCTCGTAAACAACATGGAGAACCAGCAAATGATGCTATTGGAACCTTGCCCAACAAGATAAATCAGTTGAAAAAGCAAATCCAGGCGGAGAGAATTCTATACATTAAAGAAAAAATTCAGAAGAATGAGAAGAAGCTACAATGTCATATGTCAGAAGTCATGTCAGCAATATCAACAAGGGGTTCTTCACAGTCGGAGGAAAATAGGAAAGTTCCAATTCTTTCTTCAAGAATTGACCATCCTCTATGTAAATTCAGTGGTTTTTCTCCAGTTTCAGGAGACAAAGACCACAACAGTCAAGATGTATTATCTGCTACAAGTATCAAAATTCCATGTATTGAAAGATTACCACCATATACCTCTTGGATATTTCTGGACAGAAATCAGAGAATGGCTGAAGATCAGTCAGTTGTTGGAAGAAGACGTATCTACTATGATCAACATGGAAGTGAAGCACTGATATGTAGTGACAGTGAGGAAGAGTTAACAGAACCTGAAGAAGAAAAACATGAATTTTCTGAGGCTGAAGATCGTGTTATATGGATGGCATTTGAGGAATATGGGCTAAAAGAGGAGGTACTGAATATTGTTAGCGAATTTGTTGGAGGCACCAGTTTAGAGATTCAGGAGAGGTACAAAATTATCAAGGAAAAGAACATTGGTAGGTTGGACCAGCATTCGGAGAACTTGGGAGAATATGAATCTACTAGTGGCATATGTCCAGAGAAAAGCCTGAGTGCTGCATTAGATTCTTTTGATAATCTTTTCTGTCGCCGGTGCCTGATTTTTGACTGTCGTCTGCATGGCTGTTCTCAACCTTTAACATATCCTAGTGAAAAACAGACAGTTTGGTCTGATCCTGAAGGTGACAAGAAACCATGCAGTGATCAGTGTTACCTTCAGTTAAAGGTAGTCAAAAGTGTGTCAAAAGATTCAGCTTCTGGGTCTGATCAGAATAAGAGAACAATTATGGAAGAGGCAGATGGGATATTGGCACCCTCCACTATAGAGGAACCTAGTAATCAGTGTACACCACCTTTTCCAGTAGAAGTTGATTGTCATGAATCTCTCAACTTAAATGTTCCTATCTCAATAAGTGTGGAAAAACGGAAAGTCACAAATCAGTCAGACAGAGCACTCTGTGACTCAACACTCCCTCCTGATGATTCTCAGAATTCTTATAAAAAGCTGAAGACAGTCTCAGATGATGTAGTTACTGTAAATAGTGATTCTAGCAAGAACCTAAATTTGGGTGCATGTGATGAAACTAAACATACAATTACTAGAGCAATTTTGGACAAATCTAGCCAACATAATTCAAATAAATTAGTAGATTCTTCTAGCACTTGCCATGGTGACGAGCATGACAAAAGTATTGGGGATGGACGAAAAGATCCCACAAATAAGACAGAATTTAAGAAGTTGTCCAATTCAATGGAAGGGAAAGTTGATGGGATGCTAAGTCTCTCAGATTGGAAACCTCTGGAGAAAGAATTATACTTAAAGGGTATAGAAATGTTTGGCAGAAACAGTTGCCTCATAGCAAGGAACTTACTTTCTGGCTTGAAGACTTGCATGGAAATAGCTAGTTACATGCATTCTGGAGGAGTGTCAATGCCTGATGGATCTATTGTTGCACCTAATTCAATCATGGAAGACAGGGGAAAATTTGATGCAGAGTGCACAGACCAGGAGATGCCATCTAGGTCGCGATTGCTGAGGAAAAGGGGCAAAACAAGGAAGTTTAAATATTCTTGGAAATCTGCTGGCCACCCATCAATATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGTCAATGTGTGGGAAGGAATGTACATGTGTTAATGGTGGAACTTGCTGCGAAAAATATTGCGGTTGTTCAAAAAGCTGCAAAAATCGGTTCAGAGGATGCCATTGTGCCAAGAGTCAGTGCAGAAGTCGACAATGCCCATGCTTTGCTGCTGGACGGGAATGTGACCCAGATGTCTGTCGAAATTGCTGGGTTAGTTGTGGGGATGGTTCGTTAGGGGAGCCACCTCGGCGTGGAGATGGTCAATGTGGAAATATGCGGCTTCTTTTAAGGCAACAACAGAGGATTCTCTTGGCAAAGTCTGATGTTGCAGGATGGGGAGCCTTCTTGAAGAACCCAGTTAACAAAAATGATTACCTAGGAGAGTACACAGGAGAACTAATCTCCCACCGAGAAGCCGACAAGCGTGGGAAAATATATGATCGTGCAAACTCGTCTTTCCTTTTTGACTTGAATGATCAGGCAAGAGATAAGTTAAAATTTGCAAACCATTCATCAAACCCCAATTGCTATGCAAAGGTGATGCTGGTTGCTGGAGATCACCGAGTAGGCATATTTGCGAAGGAACACATCGATGCTAGCGAGGAGCTCTTCTATGATTATCGCTATGGTCCAGATCAAGCACCGCCATGGGCACGTAAACCTGAGGGTTCCAAGAGAGACGAATCAACAGCTCCTCAAGGCAGAGCAAAGAAACACCAGTCTCATTGA	2829	0.416	MTNVGQGNKRSKKLLLVTKRSIRISAPLSNVSTCAFLFRPVRLSDIKRTKRKKDIEKKKRCKEPSKGEVRAQLPTQHGTISMVSKPTDSASKPRKQHGEPANDAIGTLPNKINQLKKQIQAERILYIKEKIQKNEKKLQCHMSEVMSAISTRGSSQSEENRKVPILSSRIDHPLCKFSGFSPVSGDKDHNSQDVLSATSIKIPCIERLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQHGSEALICSDSEEELTEPEEEKHEFSEAEDRVIWMAFEEYGLKEEVLNIVSEFVGGTSLEIQERYKIIKEKNIGRLDQHSENLGEYESTSGICPEKSLSAALDSFDNLFCRRCLIFDCRLHGCSQPLTYPSEKQTVWSDPEGDKKPCSDQCYLQLKVVKSVSKDSASGSDQNKRTIMEEADGILAPSTIEEPSNQCTPPFPVEVDCHESLNLNVPISISVEKRKVTNQSDRALCDSTLPPDDSQNSYKKLKTVSDDVVTVNSDSSKNLNLGACDETKHTITRAILDKSSQHNSNKLVDSSSTCHGDEHDKSIGDGRKDPTNKTEFKKLSNSMEGKVDGMLSLSDWKPLEKELYLKGIEMFGRNSCLIARNLLSGLKTCMEIASYMHSGGVSMPDGSIVAPNSIMEDRGKFDAECTDQEMPSRSRLLRKRGKTRKFKYSWKSAGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKECTCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQARDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKRDESTAPQGRAKKHQSH	942

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr11715g00002	942	ProSiteProfiles	SET domain profile.	800	908	IPR001214	GO:0005515
	Mupr11715g00002	942	MobiDBLite	consensus disorder prediction	49	107	-	-
	Mupr11715g00002	942	CDD	SET_EZH	800	909	-	-
	Mupr11715g00002	942	Pfam	SET domain	841	907	IPR001214	GO:0005515
	Mupr11715g00002	942	Gene3D	SET domain	701	910	IPR046341	-
	Mupr11715g00002	942	ProSiteProfiles	CXC domain profile.	687	786	IPR026489	-
	Mupr11715g00002	942	FunFam	Putative histone-lysine N-methyltransferase EZH2	701	910	-	-
	Mupr11715g00002	942	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	942	IPR025778	GO:0031519
	Mupr11715g00002	942	SUPERFAMILY	SET domain	671	912	IPR046341	-
	Mupr11715g00002	942	MobiDBLite	consensus disorder prediction	540	562	-	-
	Mupr11715g00002	942	MobiDBLite	consensus disorder prediction	72	89	-	-
	Mupr11715g00002	942	MobiDBLite	consensus disorder prediction	913	942	-	-
	Mupr11715g00002	942	Pfam	CXC domain	739	770	IPR041355	-
	Mupr11715g00002	942	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE E(Z)	105	941	IPR045318	GO:0006338\|GO:0042054
	Mupr11715g00002	942	SMART	CXC_2	735	772	IPR033467	-
	Mupr11715g00002	942	MobiDBLite	consensus disorder prediction	527	562	-	-
	Mupr11715g00002	942	MobiDBLite	consensus disorder prediction	919	935	-	-
	Mupr11715g00002	942	SMART	set_7	800	914	IPR001214	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr11715g00002	Mupr-Chr11715	11045	20883	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr11715g00002	789	911	C2H2 Transcription Factor Family	AT2G23740	24.490	3.10e-06	49.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Mupr11715g00002		SET	1.1e-07	No_clan