Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11673g00002 ATGTTCGATCCCCTAAGACAGAAGACGAAACAGGAACCGTCGGATCATTTTGATCTGATTGACGATCCTCCGTTTATATTTCACACTAGGTGTTCTCCTAAGATTTCTTCTCTTCCTTTCACTGGCGACACAACCGCAGCCGCAGGAGAAGACGACGACAACAACAACAACAGGCTCCATTCTGAGTCGTTCGGTTCGATGGAGAAGGAGTTGGTCGAATTGTACGACGCGGCCAAGAAGGCGGCGGACGCTGCCATCTCTGGCGACGCCGAACACGAGGAGAGCCGATGCATCGATGCGCTCGAGCAGCTCAAGAAATTTCCTGTCAATTATAAGATTCTCGTCAACACCCAGGTGGGCAAACATCTTAAAGTTCTCACAAAGCACCCAAGGCAGACAATTCGGGCCTTTGCTATTGACTTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAAAATGGGGGCTCTGAAAGTAAGGTTGAGTCGACTAACGGGGAGAGAGCTAAAGCTGGGAAAATGCAGAAGAGTCCTTCTGTGAAGGTTGAAAAAGGTGAAACTGTCAAGGTTGAGAAAATTGATAGGAATGGTTCATCAAAGTCGAGCTCGGAAAATATGAAAAAGATGCTAAATGTTGATGTGAAGAATGAGAAAACTGATCGTGCTGCAAGTGTCAAGGTGGAAAAGATATCCAAGGAGGATAAGCCAGTTTCTGGAGCAAAGAAAATGTCGTCCAGTTCTGCCACTCCCCCAAAGCTAAAGACTATGATTAAATCTAACGATGCAACACGAGACAAAATAAGGGAACTTCTCCATGAGGCTTTATCCAAGGTCTCCGGGGAGGCTGATGAAGATCTTATAGAAATAGTCAATGCTTCAGATCCTATTCGTGTTGCTGTGACAGTGGAGTCTGTGTTATTTGATAAATGGGGTCCTTCAAATGGGGCGCAAAAGGTCAAGTATAGGTCCTTAATGTTTAACCTTAAGGACTCAAATAACCCTGATTTCAGGAGAAAAGTTCTGCTTGGTATTGTTGAGCCAGAGCAGCTGATCAACATGAGCACAGCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAAAATCAGAAAATCACAGAGAAAGCTTTGTTTGAATGTGAGCGTGGAGTTCAACCAAAAGCTACAACCGATCAATTTAAGTGTGGCCGATGTGGTCAAAGAAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTGTTGTCTGCAGTAACCGTTGGAAGTTCTGCTAG 1308 0.4442 MFDPLRQKTKQEPSDHFDLIDDPPFIFHTRCSPKISSLPFTGDTTAAAGEDDDNNNNRLHSESFGSMEKELVELYDAAKKAADAAISGDAEHEESRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPRQTIRAFAIDLIEIWKGIIIKETSKNKNGGSESKVESTNGERAKAGKMQKSPSVKVEKGETVKVEKIDRNGSSKSSSENMKKMLNVDVKNEKTDRAASVKVEKISKEDKPVSGAKKMSSSSATPPKLKTMIKSNDATRDKIRELLHEALSKVSGEADEDLIEIVNASDPIRVAVTVESVLFDKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGIVEPEQLINMSTAEMASEQRKQENQKITEKALFECERGVQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVVCSNRWKFC 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11673g00002 435 Pfam Transcription factor S-II (TFIIS), central domain 264 381 IPR003618 GO:0006351
Mupr11673g00002 435 Gene3D - 364 435 - -
Mupr11673g00002 435 Gene3D - 244 363 IPR036575 GO:0006351
Mupr11673g00002 435 ProSiteProfiles TFIIS central domain profile. 267 390 IPR003618 GO:0006351
Mupr11673g00002 435 MobiDBLite consensus disorder prediction 227 257 - -
Mupr11673g00002 435 NCBIfam transcription elongation factor S-II 78 435 IPR006289 GO:0003676|GO:0005634|GO:0006368
Mupr11673g00002 435 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 164 IPR035441 -
Mupr11673g00002 435 MobiDBLite consensus disorder prediction 155 188 - -
Mupr11673g00002 435 CDD TFIIS_I 89 149 - -
Mupr11673g00002 435 ProSiteProfiles TFIIS N-terminal domain profile. 73 152 IPR017923 -
Mupr11673g00002 435 SMART TFS2_5 74 151 IPR003617 GO:0005634
Mupr11673g00002 435 SMART Cys4_2 395 434 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mupr11673g00002 435 SMART mid_6 265 373 IPR003618 GO:0006351
Mupr11673g00002 435 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 80 435 - -
Mupr11673g00002 435 Pfam Transcription factor S-II (TFIIS) 395 433 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mupr11673g00002 435 ProSitePatterns Zinc finger TFIIS-type signature. 397 432 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mupr11673g00002 435 Pfam TFIIS helical bundle-like domain 100 149 IPR017923 -
Mupr11673g00002 435 PIRSF TFIIS 66 435 IPR035100 -
Mupr11673g00002 435 FunFam Probable Transcription elongation factor S-II 364 435 - -
Mupr11673g00002 435 CDD Zn-ribbon_TFIIS 388 434 - -
Mupr11673g00002 435 ProSiteProfiles Zinc finger TFIIS-type profile. 393 433 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mupr11673g00002 435 SUPERFAMILY Zinc beta-ribbon 376 433 - -
Mupr11673g00002 435 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 68 164 IPR035441 -
Mupr11673g00002 435 MobiDBLite consensus disorder prediction 227 243 - -
Mupr11673g00002 435 SUPERFAMILY Elongation factor TFIIS domain 2 252 365 IPR036575 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11673g00002 Mupr-Chr11673 13840 18910 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Mupr11673g00002 TFIIS_M 9.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11673g00002 K03145 - gmx:100811982 660.218