Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11666g00001 ATGGGTAGGGGAAAGGTGGAGCTCAAGAGGATTGAGAACAAGATAAACCGTCAAGTGACATTTGCAAAGAGGAGGAACGGCTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGCGGCCCTAGCATGGCCAAGTCACTCGAACGATATCACAGATGCAGTTATGGAGCCTTGGAAGTACACCACCAACCTGAAGTAGAGACACAGAGGCGCTACCAAGAGTACCTGAAGCTAAAATCCAGAGTTGAGGCACTACAGCAAACACAAAGAAACCTCCTTGGGGAAGAATTGGAGCATTTAGATATTAAGGACCTTGAGCAGCTTGAGCGTCAGCTGGACTCTTCCTTGAAGCAAATAAGGTCCAATAAGGTATGCATATTTGTCAACGAATTAACAAATCATATATATAGGAATAATCAAGTTACTTCAACAATAACTATA 501 0.4431 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPSMAKSLERYHRCSYGALEVHHQPEVETQRRYQEYLKLKSRVEALQQTQRNLLGEELEHLDIKDLEQLERQLDSSLKQIRSNKVCIFVNELTNHIYRNNQVTSTITI 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11666g00001 167 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr11666g00001 167 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr11666g00001 167 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr11666g00001 167 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr11666g00001 167 Pfam K-box region 87 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr11666g00001 167 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mupr11666g00001 167 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr11666g00001 167 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Mupr11666g00001 167 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr11666g00001 167 FunFam MADS-box transcription factor 1 13 96 - -
Mupr11666g00001 167 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Mupr11666g00001 167 Coils Coil 122 142 - -
Mupr11666g00001 167 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr11666g00001 167 ProSiteProfiles K-box domain profile. 88 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr11666g00001 167 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11666g00001 Mupr-Chr11666 2855 11591 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11666g00001 1 153 MADS-box Gene Family AT5G15800 71.242 9.46e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr11666g00001 K-box 7.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11666g00001 K09264 - gmx:100811049 277.33