Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11645g00003 ATGGGCCAACAGAACAGACCAAGCCCACAAACTCCACACCAACAGCTCCGGCGGCGATCGTCACGCTCCAACAACACTTCCGCGGCGAAAATGTCTCTGGTGGCGAACGAGGAGTTCCAGCACATTCTGCGTGTGCTGAACACGAACGTGGACGGGAAGCAGAAGATTATGTTCGCTCTCACCTCCATCAAGGGTATTGGTAGGAGATTCGCCAACATCGTTTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGTGAGTTGAGTGCTGCTGAGTTGGATAATCTGATGACTGTGGTGGCCAACCCTAGGCAATTCAAGATCCCAGACTGGTTTTTGAACAGGAAGAAGGATTACAAGGATGGCAAGTACTCCCAGGTTGTGTCTAATGCACTTGATATGAAGCTAAGGGATGACTTGGAGAGACTCAAGAAAATCAGAAACCATCGAGGTTTGAGGCACTATTGGGGCCTTCGTGTTCGTGGTCAGCATACCAAGACTACAGGCCGCAGGGGGAAGACTGTTGGTGTGTCTAAGAAGCATAGTCCATATAGAAGCCAAGTGACACCTTTTTCAAAATCTACTACATTGTACTTGACACTTGATCATACCAAAGTTTAA 624 0.484 MGQQNRPSPQTPHQQLRRRSSRSNNTSAAKMSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKHSPYRSQVTPFSKSTTLYLTLDHTKV 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11645g00003 207 ProSitePatterns Ribosomal protein S13 signature. 151 164 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mupr11645g00003 207 Gene3D 30s ribosomal protein s13, domain 2 122 172 IPR027437 -
Mupr11645g00003 207 Gene3D - 31 110 - -
Mupr11645g00003 207 FunFam 40S ribosomal protein S18 122 173 - -
Mupr11645g00003 207 Hamap 30S ribosomal protein S13 [rpsM]. 42 182 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mupr11645g00003 207 MobiDBLite consensus disorder prediction 166 187 - -
Mupr11645g00003 207 Pfam Ribosomal protein S13/S18 44 172 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mupr11645g00003 207 ProSiteProfiles Ribosomal protein S13 family profile. 45 175 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mupr11645g00003 207 FunFam 40S ribosomal protein S18 31 110 - -
Mupr11645g00003 207 MobiDBLite consensus disorder prediction 1 29 - -
Mupr11645g00003 207 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 30 181 - -
Mupr11645g00003 207 SUPERFAMILY S13-like H2TH domain 43 182 IPR010979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11645g00003 Mupr-Chr11645 11717 15548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11645g00003 31 181 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 97.351 7.25e-110 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11645g00003 K02964 - qsa:O6P43_008091 297.745