Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11602g00001 ATGAGAGACCTTTCGTTTCATCCCAAATGCTTTACTCTTGTGCAAGCAAACAACCGGGAGAGGTGGCAGATGGATTATCATCACCCCAATCAATTCTTCATTATCATCAAGAACACCAAGCTACTGAAAGTCCCAGAGACGTTTCTGAAGCACTTGAATGAAGACGTGTCGGGTAATATTGCAGTTCTTATTGGCCCTTCTGGTGACCAGTGGCAAGTAACTATTTTGAAGAAAGGAAATGACATGTATATGCAAAATGGTTGGCCACAATTTCTGTCAGATAACTCGGTGATGCTTGACGAGTTCTTGCTTTTTACATATCATGGAGGGAACTGCTTCCATGTTCAAATTTTTTGTAAGAATGGATGTGAGAGGCCATGCCTCATAGAAACAAGTCAAGAACAAGCTGCCACCCCAAGTTTGGCGAGGACAAAGAAGAGTACACAAAGAAAAACTTTTGCTGGTTCATTCCTCCATGAATCGAAAAAGTTTTGTCAAGAAGATCTCCCTTTCAGCAACAAAGGCTCATTTTCTAATGGACGTGAGACAAAGAAAACAAGACAAAAACAAGCTTCTGCCACCCCAAGTTTGGCGAGGACAAATAAAAGTAAACAAAGAAAAACTTGTGCTGGTTCATTTCACCTCCATGAATCTAAGTCTTGTCAAGAAGATCTGCCTTTCATCAACATAGGCTCACTTTCTAACACAAAGAAAGCAAGACAAAAACAAGCTGCCACTCCAAGTTTGGTGAGGACAAATAAGAGTAAACAGAGAAAAACTTATGCCGGTTCATCACACATTCATGAATCTACGTCTTGTCAAGAAGATCTGCTTTTCAGCAACAAAGGCTCACTTTCTAAGGACTTCCCACAGCCTCAAATTTCAATTAAAATTGAAAGTTCAGAAGCAATCAAATTGGCCGAGTCTTTCACCTCTCGCAATCCTCATTGGACGCACCTCATGACAAAATCTAATGTGGAAGATCGTTGCATATTGCACATTGCCACTGAGTTTGCCAGAAAGCATATTCCCGAAGCAGTTAAAGAGATCGTTCTTTGGAATTCAGAAGGAAAATTTTGGGAAGTGACAGTGAATTGTTTTGAATTGCAAAGTAAAAGGTATACTCAGTTTACTAATGGATGGGGAAGATTCGTTCGTGATAACAAGCTCATGAGAGGTGACACTTGCATATTTGAACTTGAAGACGGCAACCATGTGAGTGTTCACATATTCAGAACCAGATAG 1245 0.4032 MRDLSFHPKCFTLVQANNRERWQMDYHHPNQFFIIIKNTKLLKVPETFLKHLNEDVSGNIAVLIGPSGDQWQVTILKKGNDMYMQNGWPQFLSDNSVMLDEFLLFTYHGGNCFHVQIFCKNGCERPCLIETSQEQAATPSLARTKKSTQRKTFAGSFLHESKKFCQEDLPFSNKGSFSNGRETKKTRQKQASATPSLARTNKSKQRKTCAGSFHLHESKSCQEDLPFINIGSLSNTKKARQKQAATPSLVRTNKSKQRKTYAGSSHIHESTSCQEDLLFSNKGSLSKDFPQPQISIKIESSEAIKLAESFTSRNPHWTHLMTKSNVEDRCILHIATEFARKHIPEAVKEIVLWNSEGKFWEVTVNCFELQSKRYTQFTNGWGRFVRDNKLMRGDTCIFELEDGNHVSVHIFRTR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11602g00001 414 Gene3D - 296 414 IPR015300 -
Mupr11602g00001 414 SUPERFAMILY DNA-binding pseudobarrel domain 32 123 IPR015300 -
Mupr11602g00001 414 ProSiteProfiles B3 DNA-binding domain profile. 42 121 IPR003340 GO:0003677
Mupr11602g00001 414 MobiDBLite consensus disorder prediction 175 205 - -
Mupr11602g00001 414 Pfam B3 DNA binding domain 39 119 IPR003340 GO:0003677
Mupr11602g00001 414 Pfam B3 DNA binding domain 319 413 IPR003340 GO:0003677
Mupr11602g00001 414 MobiDBLite consensus disorder prediction 189 205 - -
Mupr11602g00001 414 Gene3D - 9 123 IPR015300 -
Mupr11602g00001 414 ProSiteProfiles B3 DNA-binding domain profile. 317 414 IPR003340 GO:0003677
Mupr11602g00001 414 SUPERFAMILY DNA-binding pseudobarrel domain 312 413 IPR015300 -
Mupr11602g00001 414 SMART B3_2 317 414 IPR003340 GO:0003677
Mupr11602g00001 414 SMART B3_2 32 121 IPR003340 GO:0003677
Mupr11602g00001 414 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 42 413 IPR044837 -
Mupr11602g00001 414 MobiDBLite consensus disorder prediction 238 266 - -
Mupr11602g00001 414 CDD B3_DNA 321 412 IPR003340 GO:0003677
Mupr11602g00001 414 CDD B3_DNA 32 119 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11602g00001 29 400 B3 DNA Binding Superfamily AT3G18990 21.875 3.33e-18 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mupr11602g00001 B3 3e-16 CL0405