Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11593g00001 ATGAGAATAAAGACAAATGTAAAGAGAGAGAAAGTGAAGACACTGATGGTGGACCTAGTGTTGGTTGTTACTGCGGGAGTATTAATGGAGCAAAGAAGTGAAGAGAGAGAGAAAGAGAGCAGGATCATTCTAGAGACAGGGAGAAAGCTTCAGCAGATATTAGTGGTGGGTGTGAGTTGGGGTTTCAAGAGAGGAGACATGCTTAACTTGAACCCAACACTTCAAGTACTTGCTTCTTCACACCCTTACCAGATCCCAAAGGCTCAGGCTTCTTATCCTTACGGAGATCCAATTTTTACGTATGGACCACAAGCTATTGGTCAACCCCAAATGTTACCCCAGATGCTTGGATTAGCATCCAACAGAGTGGCTTTACCACTTGATCTTGCAGAAGATGGACCAATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAGAACAAACTTATCAAAAGTCGAAAGCCATATCTTCACGAGTCTCGGCACCGCCATGCTTTGAAGAGGGTTAGAGGATCCGGGGGGCGATTTCTCAGCACCAAACAGCTTGAACAGTCGAATGCAGAATTTGTCACTGGTGCACATGCCAGTTCTGACCCCGCCATTGCATATCAAAATGAACATCCATCAGAGGTGGAAAGTCATTCCTCAAAAGCAGGAGATCATGCATCTTCCATCACAACCTGCTCTGACCGGCCATGTTTGTCCGGTAACAGTGTCAATTTTAGGCAGCCGGAGTGCATATTTCTTGGCAACTCGGCCAACATGGGTGGCGCACCACAATGCAGCGGAGGCCTCACCTTCGGAGGAACAAAGCATCGGGCTTCAGTTGTC 867 0.4683 MRIKTNVKREKVKTLMVDLVLVVTAGVLMEQRSEEREKESRIILETGRKLQQILVVGVSWGFKRGDMLNLNPTLQVLASSHPYQIPKAQASYPYGDPIFTYGPQAIGQPQMLPQMLGLASNRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSTKQLEQSNAEFVTGAHASSDPAIAYQNEHPSEVESHSSKAGDHASSITTCSDRPCLSGNSVNFRQPECIFLGNSANMGGAPQCSGGLTFGGTKHRASVV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11593g00001 289 ProSitePatterns NF-YA/HAP2 subunit signature. 136 156 IPR018362 GO:0003677|GO:0016602
Mupr11593g00001 289 ProSiteProfiles NF-YA/HAP2 family profile. 131 191 IPR001289 GO:0003700|GO:0006355
Mupr11593g00001 289 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 134 188 IPR001289 GO:0003700|GO:0006355
Mupr11593g00001 289 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 82 242 IPR001289 GO:0003700|GO:0006355
Mupr11593g00001 289 SMART cbf3 130 191 IPR001289 GO:0003700|GO:0006355
Mupr11593g00001 289 Gene3D - 131 193 - -
Mupr11593g00001 289 PRINTS CCAAT-binding transcription factor subunit B signature 134 156 IPR001289 GO:0003700|GO:0006355
Mupr11593g00001 289 PRINTS CCAAT-binding transcription factor subunit B signature 165 188 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11593g00001 Mupr-Chr11593 5779 9941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11593g00001 87 250 CCAAT-HAP2 Transcription Factor Family AT1G17590 48.023 2.15e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mupr11593g00001 CBFB_NFYA 6.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11593g00001 K08064 - gmx:100793856 351.673