Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11587g00001 ATGGAAAACCCTCGTCGGAACTTGAAGCGCAAGCTCGAAGTAGATTTAACCGAAGACCAAACATGTCCGAAAGTGCAGCACCTTGCTCCTCAACAACCTCACTCAAACATCTCTGCAAAGATTCTCCAACTAGTTTCTCTCCTCAATTCCGCTTTTTCACCCTCTGCCTCGGATTGTGCTATTCTTAGTAGCGCGGTCCACGTCCTTGCCGTACATGCCGAAAACGAAGATCTAGTGGATACTGTAGTGACATGTGGCGCTGTTCCTGCTCTGGTGAGGCATCTTCGAGTGCAAGATGCAGTGAAAGATGACAGTGACGCGCCATACGCCGTGAAAGATGACGGTGATGGCGTTACCAAACCTTATCAGCTTGAGGTGGTCAAAGGATGTGCGTTGGTCCTCGAGCTTCTTGCCATTCAACGAGAGTTTCAACAAATCATTGTAGATGCTGGAGCCTTGCCCTGTCTAGTAGATTTGTTAAGGAGGCATAAGACCAGTACCGTTTCTCAATCACATATTGATCTTCTAAGGAGAGTATCTGGCGCAATAACCAGCCTTGCCCACGAAAATTCTGACATTAAGACCCTTGTCAGGATGGAAGGTGGTATTCCTCCTCTTGTTGAATTGCTTGAATACAATGACATAAAAGTACAGAGAGCAGCTGCACGGGCCTTGCGAACTCTTGCATTTCAAAATGAGGGCAATAAAAATCAGATTGTTGAATGCAATGCATTACCCACTCTTGTACTAATGCTTCGATCAGAGGATCCTAAAATACATTACGAGGCGGTTGGTACGATTGGGAATCTGGTCCACTCTTCACCAAATATTAAGAAAGAAGTTCTTCTAGCTGGTGCTTTACAACCTGTCATTTCTTCACTTAGTTCCTCCTGTTCGGAGAGCCGAAGAGAAGCAGCCCTTTTAGTTGGTCAGTTTGCCTCAACAGATGCAGATTACAAGGTTCATATTGCCCAACGAGGGGCTATTCCACCATTGCTTGACATGCTGAAGTCTTCAGATGCCGAGCTTCGGGAAATGTCATCTTTTGCACTTGGGAGGTTGGCACAGGACTCACATAATCAAGCTGGTATTGCTCATAACGGAGGTATAGAGCCTCTGCTTAAACTTCTTGAGTCAAATATTGTGCCCCTCCAACAAAATGCTGCTTTTGCTCTCTATGGTCTTGCTGATAATGAGGACAATGTTGCATACATTATCAGGGCTGGTGGTTTTCAAAAACTGAAGTCCGGAAACTTCAGAATTCAACAAACCAGAGAATGTGCAGCAAAGACGTTAACAAGATTAGAGGAAAAGATACAAGGGCGAGTGTTGAAACACCTTATATATCTTATGAACTTTGCGGAAGAAGGGATTCAAAGACGTGTAGCTATTGCACTTGCTCATTTATGTTCTCCTAATGATCGTAAAACTATATTCATTGGCAATAATGGATTAAAATTGCTGCTGGATATTGTTAAATCTCCGAACCTAAAGCAGAAGGGTGATGCTTCAGTGGCGCTTCACAAATTGGCTTCCAGAGCCAGTTCTTCTGTCTCTCTTTTTGACATTGCTCCTCCATCTCCAACCCCCCAGATCTATATGGGCGAGGAATATGTAAACAAGCCTAAACATTCTGATGTCACATTCGTGGTTGAAGGCAGAAGTTTCTATGCTCGGAGAGATTGTTTACTTTCATCAGATATATTTCGCGCGATGTTTGATGGCAGTTATAGGGAAAGGGAAGCGAAAAATATAGTGATTCCAGATATTAAATGGGATGTCTTTGAATTAATGTTGAGATATATATACACTGGATCAGTAGATGTCAATTTGGATATTGCTCATGACCTCCTCAAAGCGGCAGATCAGTATCTTCTGGACGGCCTTAAGCGTATTTGTGAAAATGTTATTGCTCAGGAACTTTCTGTGGGAAATGTTTTCCTACTGTACAACATGTCAGTGGATTTCAATGCTACTACATTAAAACATGCGTGCATACTGTTTATGCTGGAGAAATTTGATAATCTGAGCTCCCAACCATGGTATTTTCCCCTGGTTCGTTCCCTTGTGCCAGAGATATATGCGTTCTTCTTTACTTTACTTGTCAAGTCTCATCCAGTTGACTCTTTATGCAAGTACCTTGTGTTGGTCACTGGACAACAGTTCTTCGTATCCTTAGATATATCAAGAAGACACTTGGATAGGGTTTACTACATGGGGATAAGGGAGACACCCATATATCAGATTTTTGCATATCTATTGGAAAAAATGTGGTCTCTTGGAGAAGTAAGAACACAATATCGGGCTATGCCTTTAGCCACTTGTGAATTGATATGGGTAAAACAACTTATTCAAGAATTGAAATTTGCTGATGTCCAATCAATGAAACTTTATTGTGATAATCAAGTGGCTCTTCACATTGTTTCTAATCCTGTATTTCAGAGAGAATCAAACATATTGAGATTGATTGTCACTTTGTACGGGAAGGTGGCATATATATATGGTATATTCAGAATGGAAGGTGGCATACCTCCTCTTGTTGAATTGCTTGAATTCAATGACATAAATGTATGGAGATCAGCTGCACGGAAGTCATGTACGTCACTAATATAG 2613 0.4187 MENPRRNLKRKLEVDLTEDQTCPKVQHLAPQQPHSNISAKILQLVSLLNSAFSPSASDCAILSSAVHVLAVHAENEDLVDTVVTCGAVPALVRHLRVQDAVKDDSDAPYAVKDDGDGVTKPYQLEVVKGCALVLELLAIQREFQQIIVDAGALPCLVDLLRRHKTSTVSQSHIDLLRRVSGAITSLAHENSDIKTLVRMEGGIPPLVELLEYNDIKVQRAAARALRTLAFQNEGNKNQIVECNALPTLVLMLRSEDPKIHYEAVGTIGNLVHSSPNIKKEVLLAGALQPVISSLSSSCSESRREAALLVGQFASTDADYKVHIAQRGAIPPLLDMLKSSDAELREMSSFALGRLAQDSHNQAGIAHNGGIEPLLKLLESNIVPLQQNAAFALYGLADNEDNVAYIIRAGGFQKLKSGNFRIQQTRECAAKTLTRLEEKIQGRVLKHLIYLMNFAEEGIQRRVAIALAHLCSPNDRKTIFIGNNGLKLLLDIVKSPNLKQKGDASVALHKLASRASSSVSLFDIAPPSPTPQIYMGEEYVNKPKHSDVTFVVEGRSFYARRDCLLSSDIFRAMFDGSYREREAKNIVIPDIKWDVFELMLRYIYTGSVDVNLDIAHDLLKAADQYLLDGLKRICENVIAQELSVGNVFLLYNMSVDFNATTLKHACILFMLEKFDNLSSQPWYFPLVRSLVPEIYAFFFTLLVKSHPVDSLCKYLVLVTGQQFFVSLDISRRHLDRVYYMGIRETPIYQIFAYLLEKMWSLGEVRTQYRAMPLATCELIWVKQLIQELKFADVQSMKLYCDNQVALHIVSNPVFQRESNILRLIVTLYGKVAYIYGIFRMEGGIPPLVELLEFNDINVWRSAARKSCTSLI 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11587g00001 870 SMART arm_5 274 314 IPR000225 GO:0005515
Mupr11587g00001 870 SMART arm_5 316 356 IPR000225 GO:0005515
Mupr11587g00001 870 SMART arm_5 357 397 IPR000225 GO:0005515
Mupr11587g00001 870 SMART arm_5 430 471 IPR000225 GO:0005515
Mupr11587g00001 870 SMART arm_5 140 188 IPR000225 GO:0005515
Mupr11587g00001 870 SMART arm_5 190 230 IPR000225 GO:0005515
Mupr11587g00001 870 SMART arm_5 75 139 IPR000225 GO:0005515
Mupr11587g00001 870 SMART arm_5 472 512 IPR000225 GO:0005515
Mupr11587g00001 870 SMART arm_5 232 272 IPR000225 GO:0005515
Mupr11587g00001 870 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 151 201 IPR000225 GO:0005515
Mupr11587g00001 870 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 201 236 IPR000225 GO:0005515
Mupr11587g00001 870 SUPERFAMILY ARM repeat 44 167 IPR016024 -
Mupr11587g00001 870 SUPERFAMILY ARM repeat 174 512 IPR016024 -
Mupr11587g00001 870 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 369 IPR000225 GO:0005515
Mupr11587g00001 870 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 826 863 IPR044282 -
Mupr11587g00001 870 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 368 410 IPR000225 GO:0005515
Mupr11587g00001 870 Pfam BTB/POZ domain 537 639 IPR000210 GO:0005515
Mupr11587g00001 870 SUPERFAMILY POZ domain 536 639 IPR011333 -
Mupr11587g00001 870 SMART BTB_4 545 641 IPR000210 GO:0005515
Mupr11587g00001 870 ProSiteProfiles BTB domain profile. 545 611 IPR000210 GO:0005515
Mupr11587g00001 870 Pfam Armadillo/beta-catenin-like repeat 232 271 IPR000225 GO:0005515
Mupr11587g00001 870 Pfam Armadillo/beta-catenin-like repeat 190 229 IPR000225 GO:0005515
Mupr11587g00001 870 Gene3D - 35 359 IPR011989 -
Mupr11587g00001 870 Gene3D - 360 521 IPR011989 -
Mupr11587g00001 870 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Mupr11587g00001 870 Gene3D Potassium Channel Kv1.1; Chain A 531 670 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11587g00001 Mupr-Chr11587 1176 10256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11587g00001 287 513 U-box Gene Family AT1G23030 22.785 2.03e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mupr11587g00001 BTB 1.2e-20 CL0033