Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11562g00006 ATGGGAAGTTGGGAGTCAGAGGCAGAGATAGGTGGAATGACTGAAATTTATTTGCAATTTGGCTTGGTCTTGGAATTCCAAGTTCTGGGTTTGAATTTTCTTCTTTGCTACAGCAAAATGAATAAGGAGGAAAAGCCTGTGAGCGAGGAACATGGTGCAGGTTCTTGCAGAAGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAACTACACATGTTCCTCCTCGGAAGAGACAGAATCTTCTCCTAGAAATACCCTCAAGAACAGAAGAGAGTTCTCAAGATTTTGTTGCAATCAAAATGCCACCAACACCAAGTTCCAATCCCACTCCCACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCAACAAATAATTCTCCTGGGCCTTCAACATCAAGAGGCAAATCATCCATAAGAAACCTCCTTCCAAAACTGAGCTTCAGGTATCGGACACCACCGGATACTGAAAAGACAAATACTGCAGCTCCAGAAGTTTCCTCTTCAGGCATTGGAGAAAAACCTTCAATCTCAAGATCACTGTCTCTTACTAAGATATTTACTCCTAGGATAAAGAGAACGTCATCATTACCACCAAATGAAATTGGACATTCAAACCCGGAATCTGCTCATGGTGGAAGTGTTGGTGGTCCTCTAAACAAAAGAGAAGCCCAGCGAAAGATAGCCCGTTCTCTTTCAGTACCTGTCAACAACAAAGATAAAAGCCTAAGGAGGATGGATTCATTTTTCCGCGTTGTTCCATCCACTCCTCGAGTAAAGGAAGGAAATGATTTGTTGGCCACGTCCCCAACAAATGATACCGAAAATGAGGATGGTAATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGATTTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGAACTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTCACCCTATTACGGATCCAAAGTGTTCGAAATCGGAATAATGGCGCAAATAGGGTTTGGCAGGAAGTCCCGGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTAGGATTACTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCAGTGGTTCATGTGCAAGCAGTTTTGTCAATCCTTCTGGCTACATTTGCTGGCTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTTTTCAGATGGAGGAGAAGATTGCAAGCTTTATCAGAGCAGCAATATGGCCCTCAACTGATGCCACAAGCAGGACAAAATCCACGAACTTCAAACACGTTGCGGCCAGATTCAGGTTCAGGTTCAGGTTCAGGTTCAGGCCCTTCCAACCACAGTCAACCTGTGGTGCAAAATCAAGAGAACTCAAATCAGAGCTGA 1656 0.4372 MGSWESEAEIGGMTEIYLQFGLVLEFQVLGLNFLLCYSKMNKEEKPVSEEHGAGSCRRTVSLPVQKVDDPMGITEETTHVPPRKRQNLLLEIPSRTEESSQDFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPTNNSPGPSTSRGKSSIRNLLPKLSFRYRTPPDTEKTNTAAPEVSSSGIGEKPSISRSLSLTKIFTPRIKRTSSLPPNEIGHSNPESAHGGSVGGPLNKREAQRKIARSLSVPVNNKDKSLRRMDSFFRVVPSTPRVKEGNDLLATSPTNDTENEDGNGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKNCDVCKEEVRNLPVTLLRIQSVRNRNNGANRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRLQALSEQQYGPQLMPQAGQNPRTSNTLRPDSGSGSGSGSGPSNHSQPVVQNQENSNQS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11562g00006 551 CDD RING_CH-C4HC3_MARCH 303 351 - -
Mupr11562g00006 551 ProSiteProfiles Zinc finger RING-CH-type profile. 295 357 IPR011016 GO:0008270
Mupr11562g00006 551 MobiDBLite consensus disorder prediction 92 110 - -
Mupr11562g00006 551 SUPERFAMILY RING/U-box 299 354 - -
Mupr11562g00006 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 358 IPR013083 -
Mupr11562g00006 551 MobiDBLite consensus disorder prediction 272 292 - -
Mupr11562g00006 551 MobiDBLite consensus disorder prediction 202 246 - -
Mupr11562g00006 551 MobiDBLite consensus disorder prediction 73 187 - -
Mupr11562g00006 551 MobiDBLite consensus disorder prediction 118 152 - -
Mupr11562g00006 551 MobiDBLite consensus disorder prediction 165 187 - -
Mupr11562g00006 551 PANTHER OS02G0165000 PROTEIN 61 502 - -
Mupr11562g00006 551 SMART ringv_2 302 351 IPR011016 GO:0008270
Mupr11562g00006 551 MobiDBLite consensus disorder prediction 505 551 - -
Mupr11562g00006 551 Pfam RING-variant domain 303 350 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11562g00006 Mupr-Chr11562 29822 34480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11562g00006 300 357 C3H Transcription Factor Family AT2G37950 47.458 1.59e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11562g00006 - - gmx:100815566 879.396