Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11560g00001 ATGAATATAGTAGGGGTGTTGTTGGCATCTAATTTTCGAGAAAGCAAACAGTCGTCGTCGGTTGTGATTGGTCAAAATATAAATAACCCTTTGGTGAAAATCGCCATTCGTCACTGCATTGCATCAATGGCGGGGGTTTCTCTCAAGTGCGGTGACTGTGGTGCTCTGTTACGGTCTGTAGAAGAAGCCCAAGAGCATGCCGAACTCACTTCCCACTCCAACTTCTCCGAATCCACCGAACCCGTTCTCAACCTCGTTTGCGCCGCTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGTGATTTGCACACAAAGAGAACCGGCCATGCCGAGTTCGTTGACAGGACTTCCGAGACCGTGAAACCGATAAGTTTGGAGGCTCCGAAGGTCGACGCGACTGCTTCGTCGGGAAACCTGTCCGATGCGTCTACTGGACAGAATGAAGAGATGGTTGTTCCTGAAGTGGACAAAAAGCTGCTCGAGGAACTTGAATCGATGGGGTTTTCGACGGCACGAGCAACACGGGCGATTCATTACACTAGTAATGCTGGCCTTGAGGCTGCTGTAAATTGGATAGTAGAGCACGAGAATGATCCTGACATAGATCAGATGCCCTTGGTACCTGCCAACACCAAAATTGAGGCTCCTAAACCTTCTCTTACCCCGGAAGAACTAAAGGCCAAACAGCAGGAACTAAGGGAGAGAGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAAAACAGAGAGGGAAAAGGAAAAGGAGAGAATTCGCATTGGCAAGGAATTGCTAGAAGCAAAGAGGATAGAAGAAGAGAATGAGAGGAAACGGTTGTTGGCCTTGAGAAAAGCAGAGAAAGATGAAGAGAAAAGGGCTAGGGAGAAAATCAGACAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGGAGACTTGGATTGCCTCCGGAGGAACCTTCAGCAGCCAAACCTTCACCCGTTGTGGAGGAGAAAAAGAGTTTTGTGCCTGTTAGGCCTGCCACAAAAGCTGAGCAAATGAGAGAGTGCTTGCGTTCTCTTAAGCAGAACCACAAGGAGGATGATGCCAGAGTAAAGAGAGCATTCCAAACTCTTCTAACTTACGTGGGGAATGTTGCCAGAAATCCTGATGAGGAAAAATTCAGGAAGATACGTCTTAGTAACCAATCTTTTCAGGAAAGAGTTGGTTCCTTGAAAGGGGGCATTGAATTTCTAGAAATTTGTGGGTTTGAGAAGATCGATGGTGGGGAGTTTTTATTTTTGCCTAGGGACAAAGTTGAGGTGGCCGTCCTGAATTCAGCTGGATCTGAACTAGACTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG 1365 0.4696 MNIVGVLLASNFRESKQSSSVVIGQNINNPLVKIAIRHCIASMAGVSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEPVLNLVCAACSKPCRSKTESDLHTKRTGHAEFVDRTSETVKPISLEAPKVDATASSGNLSDASTGQNEEMVVPEVDKKLLEELESMGFSTARATRAIHYTSNAGLEAAVNWIVEHENDPDIDQMPLVPANTKIEAPKPSLTPEELKAKQQELRERARKKKEEEEKKTEREKEKERIRIGKELLEAKRIEEENERKRLLALRKAEKDEEKRAREKIRQKLEEDKAERRRRLGLPPEEPSAAKPSPVVEEKKSFVPVRPATKAEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPDEEKFRKIRLSNQSFQERVGSLKGGIEFLEICGFEKIDGGEFLFLPRDKVEVAVLNSAGSELDSAIKNPFFGVL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11560g00001 454 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 154 195 IPR015940 -
Mupr11560g00001 454 Coils Coil 225 257 - -
Mupr11560g00001 454 Gene3D - 346 444 - -
Mupr11560g00001 454 Gene3D - 156 202 - -
Mupr11560g00001 454 SMART PGNneu 364 427 - -
Mupr11560g00001 454 CDD PUB_UBA_plant 348 454 - -
Mupr11560g00001 454 MobiDBLite consensus disorder prediction 296 314 - -
Mupr11560g00001 454 MobiDBLite consensus disorder prediction 296 337 - -
Mupr11560g00001 454 Coils Coil 260 305 - -
Mupr11560g00001 454 MobiDBLite consensus disorder prediction 219 254 - -
Mupr11560g00001 454 ProSitePatterns Zinc finger C2H2 type domain signature. 50 72 IPR013087 -
Mupr11560g00001 454 MobiDBLite consensus disorder prediction 213 254 - -
Mupr11560g00001 454 Pfam PUB domain 361 431 IPR018997 -
Mupr11560g00001 454 PANTHER F13M7.16 PROTEIN 43 454 - -
Mupr11560g00001 454 SMART uba_6 156 194 IPR015940 -
Mupr11560g00001 454 SUPERFAMILY PUG domain-like 335 450 IPR036339 -
Mupr11560g00001 454 SUPERFAMILY UBA-like 138 208 IPR009060 GO:0005515
Mupr11560g00001 454 Pfam UBA/TS-N domain 160 192 IPR015940 -
Mupr11560g00001 454 CDD UBA_PUB_plant 154 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11560g00001 Mupr-Chr11560 2713 12159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11560g00001 139 454 C2H2 Transcription Factor Family AT1G04850 77.329 8.69e-153 435