Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11559g00001 ATGGAACTCGAAAGAGAAAAGTGCTTTTCTGTTCAAGTTTTGTTTGTTTGTGAAATGCAGCTAGTACGACAAAATGCTGCCACAATTGTGGTTGATTTTGACTTGAAGGCTGTGGAAGCCTCCGTTTCTGATTTGAAGGACATAAGTAAATGCATGGATCGAGGGGACCAAATGGCATTACCTGGTTCTGCATCTTACTATATGCAGAGAGGAATACCTGGTGCTGGAACTCAACCTGAACTGCACAATTCGCCTAATATTCGGCCATTGTCTAATCCCAACCTACCATTTCAATCAAGCATTGGTGGTGGTGGTAGCATTGGATCCACATTACCATTAGAGTCTTCAGGAATTTCACCTCCATGTGTGAATGTGAGTGCTCCTTCTGGGGCTGTGCCTGGAGACAGTTTCAAAAGGAAGAGAGGAAGGCCTAGAAAATATGGGCCTGATGGAGCTGTGTCCCTGGCGTTGACTCCCACATCGGCTAGTCATCCTGGAGCCTTGACACAAGGCCAGAAACGGGGTAGAGGCCGCCCGCCGGGCTCCGGCAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATATCATCACCATTGCAGTTGGAGAGGATGTTGCAACAAAAATCATGGCATTTTCTCAGCAGGGGCCTAGAGCTATATGTATTTTGTCAGCCAACGGCGCTGTCTCTACCGTGACACTTCGTCAGCCTTCAACATCAGGTGGCACTGTCACATATGAGGGGCGGTTTGAGATACTGTGCCTGTCAGGCTCTTACTTGGTTGCAGAAAGTGGTGGCTCCCGCAATCGAACTGGTGGGTTAAGTGTTTCTCTTGCAAGCCCTGATGGTCGGGTCATAGGAGGAGGAGTTGGTGGAGTGCTTATTGCAGCAAGTCCAGTTCAGGTCATAGTTGGGAGCTTTGTATGGGGTGGATCCAAGACAAAGATCAAGAAAAAAGAAGCTTCAGAAGGTGCAGAAATTGCTATAGAGTCGAATCATCAGACGGTTCATAATCCAGTTGCAGTGAACAGCATTTCCCCGAACCAAAATCTTACTCCCAACTCATCTCTAAGTCCTTGGCCTGCATCACGACCATTGGATATGCACAATTCCCATATTGACATCGATTTAATGCGTGGGTGA 1176 0.4762 MELEREKCFSVQVLFVCEMQLVRQNAATIVVDFDLKAVEASVSDLKDISKCMDRGDQMALPGSASYYMQRGIPGAGTQPELHNSPNIRPLSNPNLPFQSSIGGGGSIGSTLPLESSGISPPCVNVSAPSGAVPGDSFKRKRGRPRKYGPDGAVSLALTPTSASHPGALTQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDVATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVAESGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAASPVQVIVGSFVWGGSKTKIKKKEASEGAEIAIESNHQTVHNPVAVNSISPNQNLTPNSSLSPWPASRPLDMHNSHIDIDLMRG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11559g00001 391 ProSiteProfiles PPC domain profile profile. 199 341 IPR005175 -
Mupr11559g00001 391 CDD DUF296 204 318 IPR005175 -
Mupr11559g00001 391 MobiDBLite consensus disorder prediction 77 188 - -
Mupr11559g00001 391 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 119 367 IPR039605 GO:0003680
Mupr11559g00001 391 Pfam Plants and Prokaryotes Conserved (PCC) domain 205 319 IPR005175 -
Mupr11559g00001 391 SMART AT_hook_2 138 150 IPR017956 GO:0003677
Mupr11559g00001 391 SMART AT_hook_2 173 185 IPR017956 GO:0003677
Mupr11559g00001 391 SUPERFAMILY AF0104/ALDC/Ptd012-like 203 320 - -
Mupr11559g00001 391 MobiDBLite consensus disorder prediction 79 123 - -
Mupr11559g00001 391 Gene3D - 205 348 - -
Mupr11559g00001 391 FunFam AT-hook motif nuclear-localized protein 1-like 205 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11559g00001 Mupr-Chr11559 6202 14170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11559g00001 52 391 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 52.078 1.43e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11559g00001 - - gmx:100799791 576.244