Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11530g00005 ATGGAAGCAGGAGAAGCATGGTCATTTCCACAATCAAAAGAATCAGAAACAGGGTTTAATAATCATTATCGTCGTAACTTGATGGTGAAGACTGAGTTGTGCAGGAGATTCAGGAGGGGCGTTTGCGGTCTCGGTTCCAAATGCGACTACGCCCACAGCGTTGCCGAGCTCAGACGCCATCCAAAACTTTGCAGATTATTCCTTCAAAACAAACACTGTCCTTATGGACGCACTTGTCGTTACCTTCACTCAACCACTATAATACCACCTCTTCCAATCCCACCACCACCACCACCACCACCAGAACTAGGAAAACTTGATGGCTACTCTTCTGTAGAATACAAGAGAATGCAAACTTCTGCAGCAGCTGTTCCAAGTGATGGCTATACTTCTCCGGAGCACAGGATAATGCAAACTTCAACTGCTACTACAAATGCCTCAACTAGCACAGTGGCAACTAGCTCTTTGCATAAGAATGAACCATCATATCCTGTGAAGTTCATATTCAAGAAAAATCAACTACAAAAGATCAATCGCATCTATGCGGATTGGATTTAA 558 0.4373 MEAGEAWSFPQSKESETGFNNHYRRNLMVKTELCRRFRRGVCGLGSKCDYAHSVAELRRHPKLCRLFLQNKHCPYGRTCRYLHSTTIIPPLPIPPPPPPPPELGKLDGYSSVEYKRMQTSAAAVPSDGYTSPEHRIMQTSTATTNASTSTVATSSLHKNEPSYPVKFIFKKNQLQKINRIYADWI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11530g00005 185 ProSiteProfiles Zinc finger C3H1-type profile. 58 86 IPR000571 GO:0046872
Mupr11530g00005 185 SUPERFAMILY CCCH zinc finger 27 59 IPR036855 GO:0046872
Mupr11530g00005 185 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Mupr11530g00005 185 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Mupr11530g00005 185 SMART c3hfinal6 58 85 IPR000571 GO:0046872
Mupr11530g00005 185 SUPERFAMILY CCCH zinc finger 60 85 IPR036855 GO:0046872
Mupr11530g00005 185 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 62 84 IPR000571 GO:0046872
Mupr11530g00005 185 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 30 53 IPR000571 GO:0046872
Mupr11530g00005 185 PANTHER CCCH ZINC FINGER/TIS11-RELATED 26 157 IPR045877 GO:0003729
Mupr11530g00005 185 Gene3D - 22 60 - -
Mupr11530g00005 185 Gene3D - 61 86 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11530g00005 28 86 C3H Transcription Factor Family AT1G68200 41.791 6.11e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr11530g00005 zf-CCCH 7.7e-06 CL0537