LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr11523g00003	ATGACTGGCCTTACTAACGGCGATGCTGGCTCCGTCAATAAGGTACCCACCGTCAAGTTCACCAAGCTCTTCATCAATGGAGATTTCGTTGACTCTGTGTCAGGAAAGACCTTTGAGACAATAGATCCAAGAACAGGGGATGTCATAGCGAGGATTAGCGAGGGAGATAAAGAAGACATTGACATTGCTGTTAAAGCAGCGCGTCAAGCATTTGACTCTGGTCCATGGCCTCGCCTGTCCGGTGCTGCGAGAGCAAAAATTTTGGTGAAATGGGCGCAGCTAATTGACGAAAACGCAGAAGAAGTTGCGGCACTGGATGCCATTGATGCGGGGAAGTTGTACCACATGTGCAAGAACGTGGAAGTTCCAGGTGCGGCAAACAGTCTGCGTTACTATGCAGGTGCAGCTGATAAAATTCACGGAGAGGTATTGAAAATGTCCCGAGAGTTCCACGCCTACACATTGTTGGAGCCAGTTGGTGTTGTGGGACACATTATTCCATGGAATTTCCCCACCACCATGTTCTTCATTAAGGTTAGCCCTTCTTTGGCTTCTGGGTGCACCATGGTCCTCAAGCCTGCTGAGCAAACACCCCTCTCTGCTTTGTTCTGTGCTCATCTTGCTAAATTGGCTGGAATCCCTGATGGAGTCCTCAATGTTGTCCCTGGATTTGGCTCAACTGCTGGTGCTGCCTTAAGCTCACACATGGATGTTGATGCTGTCAGCTTTACTGGCTCAACTAAAACTGGTCGTGAGATCATGCAGGCTGCCGCTAAAAGTAACTTGAAACAAGTTTCTCTTGAATTAGGAGGCAAGTCCCCCCTCATCATTTTCGATGATGCTGATATCGACAAAGCTACTGATCTTGCTCTAATTGGCATCCTATATAACAAGGGAGAAGTTTGTGTTGCTAGTTCCCGTGTTTTCGTTCAGGAAGGTATCTATGATGAATTTGAGAAAAAATTGGTGGAGAAGGCCAAAAATTGGGTCGTTGGGGATCCTTTTGATCCTAAAGTTCAACAAGGGCCCCAGGTTGACAAGAGACAATTTGAAAAAATCCTTTCATACATTGAGCATGGAAAAAGAGAAGGAGCTACCCTTTTGACCGGGGGTAAAACAGTGGGCAACAAAGGCTACTTCATTGAACCGACAATTTTCTCCAATATAAAGGAGGACATGCTTATAGCACAAGATGAAATATTTGGCCCTGTGATGGCACTAAAGAAGTTTAAGACCATTGAGGAAGCAATTAAGAGTGCTAACAATACTAAGTATGGCCTAGCAGCAGGCATAGTGACAAAGAATTTGGATACGGCAAACACAGTGTCAAGGTCCATTCGTGCAGGCACCATTTGGATCAACTGCTATTTTGCCTTTGGCGATGATGTTCCCTTTGGAGGGTATAAGATGAGTGGATTTGGAAAAGATCATGGATTGGAAGCCCTTCGCAAGTACCTCCAACACAGCCTCAACATGGCTTCTCTCTCTAACTCCTTCCTCAACATCAACATGCCCACCATCAAGTTTACCAAGCTCTTCATCAATGGACACTTTGTTGATTCCATATCTGGAAGGACATTTGAGACTATAGATCCCAGAACAGAAGAGGTGACTGCAAGAGTAAGTGAGGGAGATAAAGAAGACATTGATATCGCTGTTAAAGCAGCTCGTGAGGCATTTGACTCAGGTCCATGGCCTCGCTTACCCGGCTCTGAAAGGGCAAAAATAATGATGAAATGGGCAGATCTAATTGAGCAGAACATAGAAGAAGTAGCGGCATTAGATACAATTGATGCTGGCAAGCTGCACTTTTTTAATAAGGTTGCGGAAATTCCTTCGGCTGCAAACACGCTACGTTACTATGCAGGTGCTGCTGATAAAATTCACGGCGACGTATTAAAAATGAACGGAGAGTTTCATGCTTATACGCTGTTGGAACCGGTTGGTGTTGTGGGACACATTATTCCCTGGAATGCCCCAAGCCTCACCTTTTTCATCAAGGTTAGCCCTGCCTTAGCTGCTGGCTGCACCATGGTCCTCAAGCCTGCTGAACAAACACCTCTCTCTGCTTTGTTTTATGCTCATCTAGCTAAGCTGGCTGGAATCCCAGATGGAGTGCTCAATGTGGTACCTGGATTTGGCCCAACTGCTGGTGCAGCAATAAGCTCACACATGGACATTGATGCGGTCAGTTTTACTGGTTCAATTGAAGTAGGGCGACAAGTGATGCAGGCTGCAGCTAGGAGCAATTTAAAACCGGTTTCACTTGAATTAGGAGGCAAGTCTCCTCTCATCATTTTCGATGATGCCGATATAGAAAAAGCTTCCGACCTTGCTCTCTTTGGCATCCTCTTTAACAAGGGAGAAGTTTGTGTTGCAAGTTCTCGTGTGTTCGTCCAGGAAGGGATCTACGACGAATTTGAAAAGAAGTTGGTCCAGAAGGCAAAATCTTGGGTCGTTGGGGATCCTTTTGATCCCAAATCGCAACAAGGGCCTCAGGCTGACAAGAACCAATTGGAGAAAATACTTTCCTATATTGAACATGGAAAGAGAGAAGGAGCTACCCTTTTGACAGGAGGAAGTACAGTGGGCAACAAAGGTTACTACATTCAACCAACAATTTTCTCCAATGTAAAGGAGGACATGCTTATAGCACGGGATGAAATATTTGGCCCGGTACTGGCGTTGATGAAGTTTAAGACGATGGAGGAAGCAATTAAAAGTGCTAACAATAGCAAGTATGGCCTAGCAGCAGGTATTGTGACAAAGAATTTGGATACAGCAAACACTGTGTCGAGGTCCATTCGTGCAGGCATTGTTTGGATAAACTGCTATTTTACCTTAGGGAGTGACGTTCCTTTTGGAGGGTATAAGATGAGCGGATTTGGAAGAGATTTGGGATTGGAGGCACTTCACAAGTACTTACAAGTTAAATCTGTTGTAACTCCTATTCACAATTCTCCTTGGCTTTGA	2973	0.4514	MTGLTNGDAGSVNKVPTVKFTKLFINGDFVDSVSGKTFETIDPRTGDVIARISEGDKEDIDIAVKAARQAFDSGPWPRLSGAARAKILVKWAQLIDENAEEVAALDAIDAGKLYHMCKNVEVPGAANSLRYYAGAADKIHGEVLKMSREFHAYTLLEPVGVVGHIIPWNFPTTMFFIKVSPSLASGCTMVLKPAEQTPLSALFCAHLAKLAGIPDGVLNVVPGFGSTAGAALSSHMDVDAVSFTGSTKTGREIMQAAAKSNLKQVSLELGGKSPLIIFDDADIDKATDLALIGILYNKGEVCVASSRVFVQEGIYDEFEKKLVEKAKNWVVGDPFDPKVQQGPQVDKRQFEKILSYIEHGKREGATLLTGGKTVGNKGYFIEPTIFSNIKEDMLIAQDEIFGPVMALKKFKTIEEAIKSANNTKYGLAAGIVTKNLDTANTVSRSIRAGTIWINCYFAFGDDVPFGGYKMSGFGKDHGLEALRKYLQHSLNMASLSNSFLNINMPTIKFTKLFINGHFVDSISGRTFETIDPRTEEVTARVSEGDKEDIDIAVKAAREAFDSGPWPRLPGSERAKIMMKWADLIEQNIEEVAALDTIDAGKLHFFNKVAEIPSAANTLRYYAGAADKIHGDVLKMNGEFHAYTLLEPVGVVGHIIPWNAPSLTFFIKVSPALAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGPTAGAAISSHMDIDAVSFTGSIEVGRQVMQAAARSNLKPVSLELGGKSPLIIFDDADIEKASDLALFGILFNKGEVCVASSRVFVQEGIYDEFEKKLVQKAKSWVVGDPFDPKSQQGPQADKNQLEKILSYIEHGKREGATLLTGGSTVGNKGYYIQPTIFSNVKEDMLIARDEIFGPVLALMKFKTMEEAIKSANNSKYGLAAGIVTKNLDTANTVSRSIRAGIVWINCYFTLGSDVPFGGYKMSGFGRDLGLEALHKYLQVKSVVTPIHNSPWL	990

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr11523g00003	990	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	760	949	IPR016163	GO:0016620
	Mupr11523g00003	990	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	271	460	IPR016163	GO:0016620
	Mupr11523g00003	990	FunFam	ALD5p Mitochondrial aldehyde dehydrogenase	25	289	-	-
	Mupr11523g00003	990	FunFam	Aldehyde dehydrogenase3	760	949	-	-
	Mupr11523g00003	990	FunFam	Aldehyde dehydrogenase, putative	463	488	-	-
	Mupr11523g00003	990	SUPERFAMILY	ALDH-like	499	985	IPR016161	GO:0016491
	Mupr11523g00003	990	Pfam	Aldehyde dehydrogenase family	519	980	IPR015590	GO:0016491
	Mupr11523g00003	990	Pfam	Aldehyde dehydrogenase family	29	487	IPR015590	GO:0016491
	Mupr11523g00003	990	SUPERFAMILY	ALDH-like	15	488	IPR016161	GO:0016491
	Mupr11523g00003	990	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	756	763	IPR029510	GO:0016491
	Mupr11523g00003	990	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	295	306	IPR016160	GO:0016491
	Mupr11523g00003	990	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	514	978	IPR016162	GO:0016491
	Mupr11523g00003	990	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	784	795	IPR016160	GO:0016491
	Mupr11523g00003	990	PANTHER	ALDEHYDE DEHYDROGENASE-RELATED	500	980	-	-
	Mupr11523g00003	990	FunFam	Aldehyde dehydrogenase, putative	952	978	-	-
	Mupr11523g00003	990	FunFam	ALD5p Mitochondrial aldehyde dehydrogenase	514	777	-	-
	Mupr11523g00003	990	FunFam	Aldehyde dehydrogenase3	271	460	-	-
	Mupr11523g00003	990	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	267	274	IPR029510	GO:0016491
	Mupr11523g00003	990	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	25	487	IPR016162	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr11523g00003	Mupr-Chr11523	23498	33310	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr11523g00003	496	990	Aldehyde Dehydrogenase Gene Family	AT3G24503	68.952	0.0	728

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr11523g00003	K12355		K07249	dsm:124407059	984.941