Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11519g00006 ATGGCTATCAGAGGCATCGATTTCAAGTATGATGGGTTTTTCTTGTCTATGCTCGCCACCAGTGTGTATCCTTACACCTCAGCTTCTAATGTGTTCTTTAACCTCTCTACTGATAGAGTTATTGTCGCAATTAATTGGAGGCGGTATCGTTCTTGTACGTATCCGTTGCACATATGGATCGTGGTTGACTACACTACTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGTTGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTTTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCCAAGAACTGTTTGCCTGAACAGGGTCAAAAATGGGGCTTTCTCATCTGGTTACTTTTTAGCTACTGTGGACTCCTATGCGTTGCTTGCATGTCTCTGGGGAAGTGGTTGACACGAAGACAAGCACATTTATTGCGCGCCCAACAGGGTATTCCTGTATCTGAATATGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGGCATGGGCCAAGATGCTGCTGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTCCGTGGCCTGCCTTGTGCACATAATTTTCATGTTGAGTGCATTGATGAGTGGCTTAGGCTGAATGTAAAATGTCCTCGATGCCGTTGCTCAGTATTCCCAAACCTTGATCTTAGTGCACTGTCCAATCTCCGTGCTGAGCCCGAACGATCTTCTGCCAGTTTTGTGACCACAACCAGATATGTGAGAGGCCAACCATCTAGTCAAAGTTACCGGTTAAGATTGCAGGGTCTTCTGCGCCCAGTCCGAGCTGAAATTGCAGGGCCAGTTGGTGACACAGATAATGCGTTGGAAAATGCTGAGATCGGTGTTGTATCAATTGTGACACAAGATGCATCATCTGGAGACCATGTCTCTTCTGTCGAATCCATGCCTGTCACCGTCAGTCTTTCCTCTGCACAAAGT 1194 0.4631 MAIRGIDFKYDGFFLSMLATSVYPYTSASNVFFNLSTDRVIVAINWRRYRSCTYPLHIWIVVDYTTVFVFRLLMFVDNGLAVGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEQGQKWGFLIWLLFSYCGLLCVACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAEPERSSASFVTTTRYVRGQPSSQSYRLRLQGLLRPVRAEIAGPVGDTDNALENAEIGVVSIVTQDASSGDHVSSVESMPVTVSLSSAQS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11519g00006 398 Pfam Ring finger domain 250 292 IPR001841 -
Mupr11519g00006 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 375 IPR044793 GO:0004842|GO:0010182
Mupr11519g00006 398 SMART ring_2 251 291 IPR001841 -
Mupr11519g00006 398 SUPERFAMILY RING/U-box 233 300 - -
Mupr11519g00006 398 ProSiteProfiles Zinc finger RING-type profile. 251 292 IPR001841 -
Mupr11519g00006 398 FunFam E3 ubiquitin-protein ligase SIS3 219 297 - -
Mupr11519g00006 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 297 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11519g00006 Mupr-Chr11519 35431 41537 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11519g00006 74 376 C3H Transcription Factor Family AT3G47990 73.856 3.11e-160 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11519g00006 K16284 - gmx:100812016 724.931