Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11513g00001 ATGGAATACGGTGCGTTGGTGCAAAATTGTGCGTTTGGAAGCTTGTCGGAGTGTGGTTCAGTCTCGGAAGAAGATTTGATTGAGGAGTTGCTGGTAGAAGGTTGCTGGGTGGAAGCGAGCGGAGTTGGGAGCGAGGTGCAGTACATGGCAAGTTCCGAAGCGGAAGTGGGGAAGAGATGGTGGATTGGACCAAAGGCTAATCCTGGACCATCATCCTCCGTGAAAGAGAGATTAGTGGTTGCTGTGGGGTACTTGAGAGAATACACAAAGAACGCCAATGTACTGATTCAGATATGGGTTCCTTTACGGAGAGGAGTTGGGCTTGGGCTTGGGCTTGTGCCTGACTACCACAGAAATTCAGATGAGCCCATGAGCTTAAACTCGAACGTAAACCTTCGGTTCTTTAGATGCGATGAGTACCCGCGCCTTCCTTATGACGTGCCTGGATCTTTGGCCCTTCCTGTCTTCGAAAGAGGTACTGCTACATGCCTCGGTGTCCTCCAGATTGTAATGCCTCGCTTGGACACCATCAACTATCGCCCACAACTTGACAATAATAATCTCTGCAATATTAATGCTTTCGAGGCAGTTGATTTTAGGAGTTGTGAGAACCTAATTATTCCAGGTGGTGTAAAGGTATTTGAAGAGGCAGCAGTGAATGAGATCGTGGAGGTGTTGACGTGTGTGTGCAAGACGCACAATCTGCCGTTAGCACTGACATGGGCTCCTTGCATCCAACAAGGTGGAAAGTGTGGGTATGGGCATTGGACGGAGAATTATGTGTCGAGTGTGGATAGAGCCTGTTTTGTGGGGGATGCAGACCTATTGGGGTTCCAGGAGGCATGCTCTGAGCATCACCTTTTCCGTGGACAAGGAATAGTTGGGACAGCCTTCAGAACAGGCAAGCCCTGTTTCGCCATCGATATAACAGCCTTCACCAAAGCCGAATATCCTCTGGCTCACCACGCCAGCATCTTCGGCTTGCATGCTGCCATTGCCATTCCTCTCAGGAGTACTGTCTACACCGATTTTGTGCTCGAGTTCTTCCTTCCTAAGGACTGCCATGACAGGGAACACCAGAAGCACTTGCTCAGCTCCTTATCCCTCCTCCTTCAGCAAGCTTGCCGGAGCTTGCATGTTGTCGTGGAGGATGAATTCACGTTACCTCCACTACTGCAGACACACAAATCAGAATCGCATGGGTCGTGGATCTCACATATGATGGAGGCCCAGGCCCAGGCACAGGCCCATCAGAAGGGGAAAGGCGTGTGTGTGTCGTTGGAATACCTGGAGGAAGAGCCGAAAGAGGAGTTCAAAGTGACAACCAACTGCCACTGGGACAGTAATTACGAGGCAGCACAAGAGCAGGTGTTTTCAGATTATGGGGAAGAATCTCACACTCAAACTCATACATTAGGTGGTGGCCGCCGTGGCAGAAAGTCAGGCGAGAAGAGACGAACCAAGGCCGAGAAGACTATCAGCTTGCAAGTTCTGAGACAGTACTTTGCGGGAAGCCTAAAAGATGCCGCAAAGAGCATTGGCGTGTGTCCCACAACTCTGAAAAGGATATGCAGACAGCATGGCATAACGAGATGGCCTTCAAGGAAAATAAAGAAGGTGGGGCACTCTTTAAAGAAACTTCAACTAGTGATAGATTCGGTACAGGGTGCCGAGGGCGCTATACAGATTGGCTCCTTCTATTCCAGTTTTCCAGAGTTGAGCACTGCCACTTGTGAATCATCAAAGTCAAAAGCGGAGATAGAGAACCCTGTTCCTCTGAAAGTGAAGGCTACTTTTGCGGATGAAAAAATACGTTTCAGCTTGCAACCAATATGGGGTTTCACGGATTTGCAGGTGGAGATTGCAAGGCGTTTTAATCTAAACGAGGTGAGGAACGTGGTTCTAAAGTACTTGGATGATGAGGGAGAGTGGGTTGTTTTAGCATGCGATGGGGATCTTGAGGAGTGTAAAGACTTGCATACAACGTCTCAGAGCCGCACGATTAGACTCGCCCTATTTCAAGCTTCCCCTTCTTCTTGA 2040 0.4922 MEYGALVQNCAFGSLSECGSVSEEDLIEELLVEGCWVEASGVGSEVQYMASSEAEVGKRWWIGPKANPGPSSSVKERLVVAVGYLREYTKNANVLIQIWVPLRRGVGLGLGLVPDYHRNSDEPMSLNSNVNLRFFRCDEYPRLPYDVPGSLALPVFERGTATCLGVLQIVMPRLDTINYRPQLDNNNLCNINAFEAVDFRSCENLIIPGGVKVFEEAAVNEIVEVLTCVCKTHNLPLALTWAPCIQQGGKCGYGHWTENYVSSVDRACFVGDADLLGFQEACSEHHLFRGQGIVGTAFRTGKPCFAIDITAFTKAEYPLAHHASIFGLHAAIAIPLRSTVYTDFVLEFFLPKDCHDREHQKHLLSSLSLLLQQACRSLHVVVEDEFTLPPLLQTHKSESHGSWISHMMEAQAQAQAHQKGKGVCVSLEYLEEEPKEEFKVTTNCHWDSNYEAAQEQVFSDYGEESHTQTHTLGGGRRGRKSGEKRRTKAEKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYSSFPELSTATCESSKSKAEIENPVPLKVKATFADEKIRFSLQPIWGFTDLQVEIARRFNLNEVRNVVLKYLDDEGEWVVLACDGDLEECKDLHTTSQSRTIRLALFQASPSS 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11513g00001 679 CDD PB1_NLP 593 674 IPR034891 -
Mupr11513g00001 679 PANTHER PROTEIN NLP8 130 672 IPR045012 GO:0003700
Mupr11513g00001 679 ProSiteProfiles PB1 domain profile. 592 675 IPR000270 GO:0005515
Mupr11513g00001 679 SMART PB1_new 592 675 IPR000270 GO:0005515
Mupr11513g00001 679 Pfam RWP-RK domain 492 540 IPR003035 -
Mupr11513g00001 679 MobiDBLite consensus disorder prediction 463 488 - -
Mupr11513g00001 679 SUPERFAMILY CAD & PB1 domains 589 677 - -
Mupr11513g00001 679 Gene3D - 591 678 - -
Mupr11513g00001 679 ProSiteProfiles RWP-RK domain profile. 479 560 IPR003035 -
Mupr11513g00001 679 Gene3D - 277 344 IPR029016 -
Mupr11513g00001 679 Pfam PB1 domain 593 674 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11513g00001 Mupr-Chr11513 17436 19803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11513g00001 594 676 NLP Transcription Factor Family AT4G35270 57.831 1.52e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mupr11513g00001 PB1 2.1e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11513g00001 - - var:108322742 859.751