Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11435g00001 ATGTCTTTTGCCGGCGGCGACGGCGGCGGCGGAGGTAGCGGCGTTACCTCCGGCGAGCCTCGCCAATATTTCTGCCACCAGTGCAACCGCACGGTTTTCATTTCCCCTTCCCCCTCCTCCGATCTCCTCTGCCCCGATTGCAATGGCGGATTCCTTGAAGAACTCGAAACCCCAATCCCTAACCCTAACCCTCCCAATCCTTTCTTCTCCGACTTCCCCCTCGCCGGCGCCGCCACCATTCCCCTCGTCCTCTCCGGCGGCGGCGCCGCCCAGCCCTTCGACGATCTCTCCGCCCTCTTCGGCAATCGATCCGACGTCGGTGCCGACGCCTTCAACCCCCTCCTCTTCCTCCAAAACTACTTCCAAACCCTAAGAGCCGGAGGCGGCAACCTCCAACTCGTGATCGAGGCCGGCGACCCCGCCGGAGCGTTCCGCTTCCCTGGCAACGCCACCCACGGCGACTACTTCTTCGGGCCGGGCCTCGAGGAGCTGATCCAGCACCTCGCCGAGAACGATCCCAACCGCTACGGCACCCCGCCGGCGTCCAAATCCGCCGTCGAGGGGCTGCCAGACGTATCCGTCACTGAGGAGCTTCTGGCGTCGGACTCGGCGCAGTGCGCCGTGTGCAAAGACACCTTCGGCCTCGGCGAGACCGCAAAGCAGATGCCGTGTAAGCATATATATCATGCGGATTGCATTTTTCCTTGGTTGGAATTGCATAACTCTTGCCCCGTTTGTCGCTATGAGTTGCCCACGGACGATCCTGATTACGAGCAGAGGGCTCGTCGCGGTGCCGGTGGTGGTAGTGGCGGTGGGGTGGCTCCCCAGGTGAATTGGAACCTGGCTGTGGGGGCTGGTGGTTCTGCGGATTCCTCTGATGGCGGCGGTGGTGATAATGCGCAGCGGAGGAGGTATAGGGTGGCTTTGCCGTGGCCGTTTAGGCAATTTGTTTCGTCTGTTGCTGAGACGAGTAATGTTGGGAGTGCCAACAATGATAACAACAATAACCACAACAGCAATAGCAATAGTGGGAATAATGGTGGGCAATCGAATTCTGGAAACAGGGGCATGCAGAAGATTAAGTACGTGTTTGGTTTCACTTTGGATTCTCAGAATCATCTAAATATGAAGGATATGAATAATGAAGCAAATCTTTTAGCACTAGTATGA 1170 0.5786 MSFAGGDGGGGGSGVTSGEPRQYFCHQCNRTVFISPSPSSDLLCPDCNGGFLEELETPIPNPNPPNPFFSDFPLAGAATIPLVLSGGGAAQPFDDLSALFGNRSDVGADAFNPLLFLQNYFQTLRAGGGNLQLVIEAGDPAGAFRFPGNATHGDYFFGPGLEELIQHLAENDPNRYGTPPASKSAVEGLPDVSVTEELLASDSAQCAVCKDTFGLGETAKQMPCKHIYHADCIFPWLELHNSCPVCRYELPTDDPDYEQRARRGAGGGSGGGVAPQVNWNLAVGAGGSADSSDGGGGDNAQRRRYRVALPWPFRQFVSSVAETSNVGSANNDNNNNHNSNSNSGNNGGQSNSGNRGMQKIKYVFGFTLDSQNHLNMKDMNNEANLLALV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11435g00001 389 CDD RING-H2_RNF126-like 205 247 - -
Mupr11435g00001 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 253 IPR013083 -
Mupr11435g00001 389 Pfam Ring finger domain 205 247 IPR001841 -
Mupr11435g00001 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 105 251 - -
Mupr11435g00001 389 Pfam zinc-ribbon 22 55 IPR039525 GO:0061630
Mupr11435g00001 389 SUPERFAMILY RING/U-box 191 253 - -
Mupr11435g00001 389 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
Mupr11435g00001 389 SMART ring_2 206 246 IPR001841 -
Mupr11435g00001 389 MobiDBLite consensus disorder prediction 257 277 - -
Mupr11435g00001 389 MobiDBLite consensus disorder prediction 324 356 - -
Mupr11435g00001 389 FunFam E3 ubiquitin-protein ligase RING1-like 167 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11435g00001 Mupr-Chr11435 2638 10481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11435g00001 164 262 C3H Transcription Factor Family AT5G15820 54.545 6.18e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11435g00001 K11982 - gmx:100818686 502.286