Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11356g00001 ATGATGAGTGGTTTTGGAGAATCAACGAGAGCGTCTGCACCGAGCCCATCATGCTCTGGGAACAGTTCTAACGATGCTGGCGATTTCGAATGCAACATATGCTTCGATTTGGCGCAAGACCCTGTGATCACTCTGTGTGGACATCTATTCTGTTGGCCATGCCTTTACAGGTGGCTCCATCATCACTCCCATTCTCAGGAGTGCCCTGTTTGCAAGGCCCTTGTGCAAGAAGAGAAATTGGTGCCTCTTTATGGAAGGGGCAAATCACAGACCGATCCCAGGACTAAATTGTATCCTGGAATGGAGATCCCTCACCGTCCTTCCGGGCAGAGGCCACAAACGGCACCGCCCCCGCCTCCACCGGAGGCCAACCCTTTTGGAAATTATGGGTTTGGACTCATGGGGGGCTTCATTCCCATGGCAACTGCCAGATTTGGGAACTTCACGCTTTCCACTGCCTTTGGTGGATTTATCCCATCTCTGCTCAACATTCATTTCCATGGCTTTCAGGATGCCACTGTGTATGGGACAACGTCTGGTTACCCTTTTGGGTTTAATGCCTTTCATGGAGGGAATGTGCGGGGTTTTCCGCAGGCAACTGGTCAAGTGCAGCGGCAGGAGGACAATGTTTTGAAGAATTTGCTCTTGTTGATTGGATTTCTTGTCCTTCTTACGGTGTAA 681 0.5051 MMSGFGESTRASAPSPSCSGNSSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKSQTDPRTKLYPGMEIPHRPSGQRPQTAPPPPPPEANPFGNYGFGLMGGFIPMATARFGNFTLSTAFGGFIPSLLNIHFHGFQDATVYGTTSGYPFGFNAFHGGNVRGFPQATGQVQRQEDNVLKNLLLLIGFLVLLTV 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11356g00001 226 SUPERFAMILY RING/U-box 27 84 - -
Mupr11356g00001 226 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Mupr11356g00001 226 MobiDBLite consensus disorder prediction 1 20 - -
Mupr11356g00001 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 224 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mupr11356g00001 226 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Mupr11356g00001 226 SMART ring_2 31 71 IPR001841 -
Mupr11356g00001 226 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 14 85 - -
Mupr11356g00001 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 92 IPR013083 -
Mupr11356g00001 226 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Mupr11356g00001 226 MobiDBLite consensus disorder prediction 85 125 - -
Mupr11356g00001 226 MobiDBLite consensus disorder prediction 110 125 - -
Mupr11356g00001 226 CDD RING-HC_AtRMA-like 29 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11356g00001 Mupr-Chr11356 5132 6344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11356g00001 21 224 C3H Transcription Factor Family AT2G23780 64.593 8.50e-89 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11356g00001 K10666 - gmx:100814783 404.06