LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr11341g00007	ATGGTATGTAAGACTCTGACAAGAATGAAAGTGCGTGCGCAGATAAGGCTTCAATCTCAAACTTTACTCCTTTTTGCAGCATCTGCTTTAGCTCCAACCTTCATAAGCAACAGTAAGACATGCCACACAGCATACAATCTCCAATCCATTCAAAAAAAGGACAAATACTTTGGAATGTATATGAACATTACCTCCATTGTGGTCCTATATTACGGATCCTTGTTTTCTAAATTCATCTGCATGGCCAACAATGGTGTAAAGGAGCCCTTGCTGTTGGGATCACTGGATGTGACTCAAAGGGATAAATGTCAGTTAAAAAAGAGAAGGTTACTTCATTCTAGAAGTGCTCCTCACACAGCTCTTGTTCCTACCAAGACAAATGGCAATGAATCAATTCCCCGTACTGCGTTCACTTTTCAGAATTTGCATCCAAGCTTTAAAAGAGTGTCTATCTACCTAGCAGTCTATTTAGGTGTAGGTGCTATAATTTTCTACCTTGTCAGGAACCAGATTAAGGGGCTGAAAACAGATGGAATTCTTGATGCTATATACTTTACAATTGTGACAATGACCACTGTTGGATATGGAGACCTTGTTCCTAATAGCAACCTTACGAAACTACTTGCATGTGCTTTTGTTTTCTCTGGAATGGCATTGGTTGCCCTAATTCTAAGCAAAGCAGCAGACTACTTAGTTGAGAAGCAGGAAGTTTTGCTAGTGAAAGCTATGCGCATGCATCAAAAAGTTGGTTCAACTGAAATTTCAAAGGAGGTTGAGACCAATAAAACAAGATACAAATTTTTTATGGTCTTTTTCCTTCTTTTGATTCTGATCATTGTGGGGACAATTTTTTTGGTAACTGTTGAGAAATTGGAAATTATTGATGCATTCTACTGTGTTTGTTCTACATTTACAACCCTGGGTTATGGGGATAAAAGTACTATTATTTTAGCTCAGCTTTTCCTCTACATTGCTGAGCTAAACACTGAAAGCAGACAAAAGGAACTTGTCAAGTGGGTTCTTACAAGGAAAACGACCATTTTAGATTTGGAGGCTGCTGATCTTGATGAGGATGGGACTGTTGGGGCTGCTGAATTCGTTATTTATAAGCTCAAAGAGATGGGGAAGATTAGCCAAGAAGATATATCACTCGTGCTGCAGGAGTTTGAAGAGCTTGATGTTGATCAGTCTGGTACACTGTCAATTTCGGATATAACACTTGCTCAGTCATCTTAA	1236	0.3892	MVCKTLTRMKVRAQIRLQSQTLLLFAASALAPTFISNSKTCHTAYNLQSIQKKDKYFGMYMNITSIVVLYYGSLFSKFICMANNGVKEPLLLGSLDVTQRDKCQLKKRRLLHSRSAPHTALVPTKTNGNESIPRTAFTFQNLHPSFKRVSIYLAVYLGVGAIIFYLVRNQIKGLKTDGILDAIYFTIVTMTTVGYGDLVPNSNLTKLLACAFVFSGMALVALILSKAADYLVEKQEVLLVKAMRMHQKVGSTEISKEVETNKTRYKFFMVFFLLLILIIVGTIFLVTVEKLEIIDAFYCVCSTFTTLGYGDKSTIILAQLFLYIAELNTESRQKELVKWVLTRKTTILDLEAADLDEDGTVGAAEFVIYKLKEMGKISQEDISLVLQEFEELDVDQSGTLSISDITLAQSS	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr11341g00007	411	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	150	383	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Mupr11341g00007	411	SUPERFAMILY	EF-hand	350	406	IPR011992	-
	Mupr11341g00007	411	FunFam	Calcium-activated outward-rectifying potassium channel 1	143	238	-	-
	Mupr11341g00007	411	Gene3D	-	247	326	-	-
	Mupr11341g00007	411	Gene3D	-	143	237	-	-
	Mupr11341g00007	411	PRINTS	Two pore domain K+ channel signature	188	216	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Mupr11341g00007	411	PRINTS	Two pore domain K+ channel signature	305	314	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Mupr11341g00007	411	ProSitePatterns	EF-hand calcium-binding domain.	393	405	IPR018247	-
	Mupr11341g00007	411	ProSitePatterns	EF-hand calcium-binding domain.	354	366	IPR018247	-
	Mupr11341g00007	411	Pfam	Ion channel	151	232	IPR013099	-
	Mupr11341g00007	411	Pfam	Ion channel	273	315	IPR013099	-
	Mupr11341g00007	411	SUPERFAMILY	Voltage-gated potassium channels	242	314	-	-
	Mupr11341g00007	411	SUPERFAMILY	Voltage-gated potassium channels	140	247	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr11341g00007	Mupr-Chr11341	34499	44237	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr11341g00007	113	411	Ion Channels	AT5G55630	58.228	1.16e-128	373

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr11341g00007	K05389		-	gmx:100777388	517.694