Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11312g00002 ATGAGTGTGAGATCCAAAAACTTGAATTGTGTTTTCTATGCAGATTCGTACCATCCCATTCAAGCTGGCAGCATCGACGGCACTGATGTTGTTCCTCACGACAACGCCGTTTATCGCGCTCAACTCTGTTCCTCTATTGGCCTCTATGACCCATTTGGTGATCCTAAGGCCACTGGAGACCCTCATTGCACTCTCTTCGTGGCTCGCCTCTCTCGCCTCACCACTGACGATACGCTCCGCAAGGTTATGAGTAAGTATGGTCGGGTGAAGAACTTGCGCTTGGTCAGGGACATAGTGACAGGAGCTTCTCGTGGTTATGCTTTTGTTGAATACGAAACTGAAAGGGAGATGCGACGAGCATATATGGATGCTCATCATTTGATTGTTGATGATAGTGAAATCATAGTGGATTACAACAGACAGCAATTGATGCCTGGATGGATTCCTAGAAGGTTAGGTGGTGGTCTTAGTGGTAAAAAGGAATCGGGACAACTTCGTTTTGGGGGAAGAGAGAAACCATTTCGTGCACCCCTGAAACCAATCCCATTCGAGGAGTTGAAGAAGCTTGGCATCCCACCTCCACCTGAGGGAAGATATATGTCGCGCTTTCAGGTGCCATCCCCCCCTAGAAGAGAAAGGAACCTTTCAGACAGGGAAGAAGAGTCTCGTAGTCATAGAAGAAAGGGTTCTAAAGACATTGAGGAAGGGCACTACAGAAGGAGTTCAAGTCACCGAAGGAGCTCGTTGGAGAGGAGTGGTCGTTACCATGACAGGGGTTCTTCGGAGAAAGAACATCATTCTCGGAAAAGGAAAGAAAGAGATGAACGATCTCGCAGGCGGGAGAAATATAGTCGCCATTCCCCTCACAAGGACTAA 876 0.4795 MSVRSKNLNCVFYADSYHPIQAGSIDGTDVVPHDNAVYRAQLCSSIGLYDPFGDPKATGDPHCTLFVARLSRLTTDDTLRKVMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYMDAHHLIVDDSEIIVDYNRQQLMPGWIPRRLGGGLSGKKESGQLRFGGREKPFRAPLKPIPFEELKKLGIPPPPEGRYMSRFQVPSPPRRERNLSDREEESRSHRRKGSKDIEEGHYRRSSSHRRSSLERSGRYHDRGSSEKEHHSRKRKERDERSRRREKYSRHSPHKD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11312g00002 291 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 12 230 - -
Mupr11312g00002 291 SUPERFAMILY RNA-binding domain, RBD 49 169 IPR035979 GO:0003676
Mupr11312g00002 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Mupr11312g00002 291 MobiDBLite consensus disorder prediction 211 281 - -
Mupr11312g00002 291 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 50 171 - -
Mupr11312g00002 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Mupr11312g00002 291 Gene3D - 50 171 IPR012677 -
Mupr11312g00002 291 MobiDBLite consensus disorder prediction 152 291 - -
Mupr11312g00002 291 CDD RRM_snRNP35 59 152 IPR034146 -
Mupr11312g00002 291 SMART rrm1_1 64 137 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11312g00002 63 139 Eukaryotic Initiation Factors Gene Family AT1G49760 29.870 3.74e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11312g00002 K13155 - gmx:100814109 468.388