Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11309g00001 ATGGAATTTGAGGAGCAAGAGGAAGCTGAGCTGGGGATGCCCGGAGCGAGTTACGACGACTCGGCGTTCAACCCGTGCCGAGTGAAAATGCCGAGTCACGGCGAAGAAGAGCCCGTGGCGGTGCCGGTGACTCCACCCACCATGACCCGAAACAGCGGCAAGGGAAAGTACAAAGAGTGCCTGAAGAACCACGCCGTGGGAATCGGTGGCCACGCGCTCGACGGATGCTGCGAGTTCATGGCGGCGGGCGCGGAGGGCACCCTCGACGCTCTCAAATGCGCCGCCTGTAACTGCCATCGCAACTTCCACCGCAAGGAGGCCACCGAAAGCCCCTTCCTTTTGCCGTTCCACCACCGCCGCCACCAGCCGCCACAGTTCGCGGCGTACTATCGGGCGCCGGCGGGGTACTTGCACGTGGCGGGGCAGCAGAGAGGAGGGGTTGCCACGCTGGCGCTTCCGTCTACGTCAGGTGCAGGCGGTGGGACCCAGAGCCCGAGGGAGGACCAGGAAGATGTTTCGGACCCAAGTGGTGGCGGGTCCAGAAAGAGGTTCAGGACCAAGTTCACGCAGGAACAGAAGGACAAGATGCTCGGTTTCGCTGAGAAATTGGGTTGGAGGATTCAGAAGCACGACGAGAGTGTTGTGCAGGAGTTCTGTTCCCAGACTGGCGTCCAGCGCCATGTTCTTAAGTTACCATCACAGCCACCATTCCAAGCTGGAAGTTCAACAAAGTCGAAGCTGGGAAATTGCGTTGCTGAATGTCTGACAAGTCTGCTA 777 0.601 MEFEEQEEAELGMPGASYDDSAFNPCRVKMPSHGEEEPVAVPVTPPTMTRNSGKGKYKECLKNHAVGIGGHALDGCCEFMAAGAEGTLDALKCAACNCHRNFHRKEATESPFLLPFHHRRHQPPQFAAYYRAPAGYLHVAGQQRGGVATLALPSTSGAGGGTQSPREDQEDVSDPSGGGSRKRFRTKFTQEQKDKMLGFAEKLGWRIQKHDESVVQEFCSQTGVQRHVLKLPSQPPFQAGSSTKSKLGNCVAECLTSLL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11309g00001 259 MobiDBLite consensus disorder prediction 167 184 - -
Mupr11309g00001 259 SUPERFAMILY Homeodomain-like 173 230 IPR009057 -
Mupr11309g00001 259 MobiDBLite consensus disorder prediction 1 20 - -
Mupr11309g00001 259 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 231 - -
Mupr11309g00001 259 MobiDBLite consensus disorder prediction 33 52 - -
Mupr11309g00001 259 Pfam ZF-HD protein dimerisation region 56 107 IPR006456 -
Mupr11309g00001 259 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 56 106 IPR006456 -
Mupr11309g00001 259 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 106 IPR006456 -
Mupr11309g00001 259 MobiDBLite consensus disorder prediction 150 184 - -
Mupr11309g00001 259 NCBIfam homeobox domain, ZF-HD class 181 230 IPR006455 -
Mupr11309g00001 259 Gene3D - 166 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11309g00001 Mupr-Chr11309 8185 9060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11309g00001 54 231 ZF-HD Transcription Factor Family AT4G24660 56.831 2.67e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mupr11309g00001 ZF-HD_dimer 7.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11309g00001 - - gmx:100798992 324.709