Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11295g00004 ATGAAGTTCAATCCGAGGGTTTCAAGCAGCCGCCGCAAGAGTCGCAAGGCTCACTTCTCGGCGCCGTCGAGCGTCCGGCGCGTCCTGATGAGCGCGCCTCTCTCCGGCGACCTCCGGTCAAAGTACAACGTGCGGTCGATCCCCGTTCGCAAGGACGACGAGGTGCAAGTGGTTCGAGGAACCTACAAGGGCCGCGAAGGCAAGGTGGTGCAGGTGTATCGGCGCAAGTGGGTGATCCACATCGAACGCATCACGCGCGAGAAGGTTAACGGCTCCACCGTCAACGTCGGCATCCACCCTTCCAAGGTTGTGGTGACCAAGCTCCGAATGGACAAGGACCGCAAGTCCCTCCTCGATCGTAAGGCCAAGGGTCGCGCCGCCGCCGACAAGGAAAAGGGTACCAAGTTCGCTCCCGAGGATATCATGCAGACCAGAGGCTGGGAGTTGGATGTGGGAGCGAGATGCCTGGTCATCTTGTTTAACGAGCAATGTTGGGTTGCTTTCTCTGCCAGGAGTAGGGGATTGGTGTGTGGATTAAGAGAGGGGAGAGGATTTATAGGATCTTTGTAA 570 0.5807 MKFNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSIPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGIHPSKVVVTKLRMDKDRKSLLDRKAKGRAAADKEKGTKFAPEDIMQTRGWELDVGARCLVILFNEQCWVAFSARSRGLVCGLREGRGFIGSL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11295g00004 189 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
Mupr11295g00004 189 MobiDBLite consensus disorder prediction 1 20 - -
Mupr11295g00004 189 MobiDBLite consensus disorder prediction 1 22 - -
Mupr11295g00004 189 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Mupr11295g00004 189 FunFam 60S ribosomal protein L26 1 144 - -
Mupr11295g00004 189 SMART kow_9 48 75 IPR005824 -
Mupr11295g00004 189 Gene3D - 1 143 IPR014722 -
Mupr11295g00004 189 CDD KOW_RPL26 52 105 IPR041988 GO:0003723
Mupr11295g00004 189 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Mupr11295g00004 189 Pfam KOW motif 51 82 IPR005824 -
Mupr11295g00004 189 Hamap 50S ribosomal protein L24 [rplX]. 9 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Mupr11295g00004 189 NCBIfam 50S ribosomal protein L24 8 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Mupr11295g00004 189 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 142 IPR005756 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11295g00004 Mupr-Chr11295 27574 29247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11295g00004 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 85.315 2.90e-89 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11295g00004 K02898 - gmx:100819391 261.922