Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11293g00003 ATGGACGTTGACACCCCACATCTATCCGACGTCGTTGCAGATCCATCAACGGTCATGGCTGCCTTCAGCGGTGATGAAACGGCACCGTTTTTCGGCTTCCTCGGAGCCGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTGATGAGACCTGAGCTGGTGATGAAGTCTATTGTTCCTGTTGTCATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTTATAATCAGTACCGGTATTAACCCAAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCTTGTGGCTTGGCTGGCCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGACGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATTGTTGGTATTATCCTGTCTTCTCGTGCTGGCCAGTCTAGAGCCGAATAA 549 0.49 MDVDTPHLSDVVADPSTVMAAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11293g00003 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 173 IPR035921 -
Mupr11293g00003 182 FunFam V-type proton ATPase proteolipid subunit 28 179 - -
Mupr11293g00003 182 Gene3D - 28 179 IPR035921 -
Mupr11293g00003 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 73 97 IPR000245 GO:0033179|GO:0046961|GO:1902600
Mupr11293g00003 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 47 71 IPR000245 GO:0033179|GO:0046961|GO:1902600
Mupr11293g00003 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 124 150 IPR000245 GO:0033179|GO:0046961|GO:1902600
Mupr11293g00003 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 151 174 IPR000245 GO:0033179|GO:0046961|GO:1902600
Mupr11293g00003 182 CDD ATP-synt_Vo_c_ATP6C_rpt1 30 97 - -
Mupr11293g00003 182 SUPERFAMILY F1F0 ATP synthase subunit C 31 94 IPR035921 -
Mupr11293g00003 182 NCBIfam V-type ATPase subunit C 30 138 IPR011555 GO:0033179|GO:0046961|GO:1902600
Mupr11293g00003 182 CDD ATP-synt_Vo_c_ATP6C_rpt2 106 173 - -
Mupr11293g00003 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 20 178 - -
Mupr11293g00003 182 Pfam ATP synthase subunit C 34 93 IPR002379 GO:0015078|GO:0033177|GO:1902600
Mupr11293g00003 182 Pfam ATP synthase subunit C 114 172 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11293g00003 Mupr-Chr11293 19849 21819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11293g00003 19 182 Primary Pumps ATPases(2) AT2G16510 98.780 1.17e-111 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11293g00003 K02155 - gmx:100812380 287.73