Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11289g00001 ACTCCACTTTGGCGAAATGGACCATCCGAAAAACCAGTGTTGTGTAACGCTTGTGGATCTCGATACAAGTTGAAAGGACACCTTGACAATTATCTCCCCAAGAATTTCCAACTTCACTCACATAACAACAACTACTTTAAAAATATTCCACCTACAGATGACATAATTTCAGAGTTTTGGAACAAAATCCCTACAAGGAAACGATCACTGGAGCGAATAACAGCAATGCAGAAGTTTCAAAAGGAGCTTCTGAGTTTGTATAGATGTGAAAGGCAACCAAATGAGTCATCCCCAGAAGAGATTTTATTGGTGGATAAGGTGAACAACTTCATACCCTCAAATGAGATAGGACTTGGAGCCATTCTTCTTAAGACAGATCCG 381 0.399 TPLWRNGPSEKPVLCNACGSRYKLKGHLDNYLPKNFQLHSHNNNYFKNIPPTDDIISEFWNKIPTRKRSLERITAMQKFQKELLSLYRCERQPNESSPEEILLVDKVNNFIPSNEIGLGAILLKTDP 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11289g00001 127 CDD ZnF_GATA 1 27 IPR000679 GO:0006355|GO:0043565
Mupr11289g00001 127 PANTHER OSJNBB0038F03.10 PROTEIN 1 50 IPR044589 -
Mupr11289g00001 127 SMART GATA_3 1 37 IPR000679 GO:0006355|GO:0043565
Mupr11289g00001 127 ProSiteProfiles GATA-type zinc finger domain profile. 1 26 IPR000679 GO:0006355|GO:0043565
Mupr11289g00001 127 Pfam GATA zinc finger 1 27 IPR000679 GO:0006355|GO:0043565
Mupr11289g00001 127 Gene3D - 1 80 IPR013088 GO:0006355|GO:0008270
Mupr11289g00001 127 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11289g00001 Mupr-Chr11289 5006 5570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11289g00001 1 33 C2C2-Gata Transcription Factor Family AT5G47140 78.788 4.03e-13 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mupr11289g00001 GATA 7e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11289g00001 - - ccaj:109803880 164.081