LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr11281g00003	ATGGCATTTGCAGGAACAACCCAGAAGTGTATGGCCTGTGACAAAACTGTTTATCTGGTTGATAAGTTGACTGCAGATAACCGAGTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAGCTTAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGCAGGCCACACTTTGACCAACTGTTCAAAAGAACTGGGAGTCTTGACAAAAGCTTTGAAGGGACACCAAAAATTGCCAAGCCAGAAAAAAATATGGATGAGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGTGGAACAAGGGATAAATGTGCTGGTTGTCAGAAAACAGTGTATCCCACTGAGAAGGTTACTGTGAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATCAGTCCTTCCAATTACATAGCACACGAGGGAAAACTCTACTGCAAGCACCACCATATCCAATTGATCAAGGAGAAGGGTAATTTAAGCCAACTCGAAGGTGACAATGACAAGAGTGCAATTAATGGGAAAATCAATGGTGAAGAAATTGCCGCAGAGACATGA	591	0.4281	MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKNMDEKPAAAKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDNDKSAINGKINGEEIAAET	196

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr11281g00003	196	PANTHER	OS06G0237300 PROTEIN	4	93	-	-
	Mupr11281g00003	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	101	134	-	-
	Mupr11281g00003	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	36	76	-	-
	Mupr11281g00003	196	SMART	lim_4	108	160	IPR001781	-
	Mupr11281g00003	196	SMART	lim_4	9	61	IPR001781	-
	Mupr11281g00003	196	Gene3D	Cysteine Rich Protein	104	173	-	-
	Mupr11281g00003	196	Gene3D	Cysteine Rich Protein	4	74	-	-
	Mupr11281g00003	196	FunFam	LIM domain and actin-binding 1	4	74	-	-
	Mupr11281g00003	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	35	-	-
	Mupr11281g00003	196	ProSitePatterns	LIM zinc-binding domain signature.	10	44	IPR001781	-
	Mupr11281g00003	196	ProSiteProfiles	LIM domain profile.	107	167	IPR001781	-
	Mupr11281g00003	196	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	135	174	-	-
	Mupr11281g00003	196	CDD	LIM1_SF3	6	68	-	-
	Mupr11281g00003	196	ProSiteProfiles	LIM domain profile.	8	68	IPR001781	-
	Mupr11281g00003	196	FunFam	LIM domain and actin-binding 1	103	173	-	-
	Mupr11281g00003	196	CDD	LIM2_SF3	109	169	-	-
	Mupr11281g00003	196	Pfam	LIM domain	10	64	IPR001781	-
	Mupr11281g00003	196	Pfam	LIM domain	109	163	IPR001781	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr11281g00003	Mupr-Chr11281	32349	33852	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Mupr11281g00003		LIM	1.5e-12	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr11281g00003	K09377		-	gmx:100499947	410.223