Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11242g00005 ATGTATATTACCAAAATCATCGAAGTTCCACTTCTACCTCTATGGTACCAGAATCTTCTGTTACAAGCTGGCTCTACACTACTTTCCTCGATTGTGCACATATATGTCCATCTGGCCAGGGGTGATACGAATTCCATCTTCCCAGCTGCCATTTCAAAGGATGGCCGATCATACAATGATCAGTTGTTTAGTGCTGGAGCAGATGTCCTTCACAGAATTGGTGAGGATGGGAGAATTATACAGGAATTTATTCAACTTGGTGCTAAAGCAAAAGTGGCTGCTTCAGAGGCCATGGATGCTGAAGCTACTCTAGGGGAAATACCAGATGAATTCCTCGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTGTCATTCAGAGGCATCTTCTTAGTGATAGTACTGACCCCTTCAACCGTTCTCATCTGACCGCGGATATGCTGATTCCTGATGATGAGCTAAGAGCAAGAATTGAGGAGTTTGTGAGGTCTCAGGAAATGAAGAAACACGGTGAAGGGCTAAGCTTACAGAGTACCAAGGTCACGATTCAGACTACAAATGGGGAAATGTTGATTGATTAG 618 0.4353 MYITKIIEVPLLPLWYQNLLLQAGSTLLSSIVHIYVHLARGDTNSIFPAAISKDGRSYNDQLFSAGADVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDDELRARIEEFVRSQEMKKHGEGLSLQSTKVTIQTTNGEMLID 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11242g00005 205 SMART Ubox_2 110 173 IPR003613 GO:0004842|GO:0016567
Mupr11242g00005 205 FunFam Ubiquitin conjugation factor e4 a 106 184 - -
Mupr11242g00005 205 CDD RING-Ubox_UBE4A 109 177 - -
Mupr11242g00005 205 Pfam U-box domain 107 178 IPR003613 GO:0004842|GO:0016567
Mupr11242g00005 205 SUPERFAMILY RING/U-box 99 179 - -
Mupr11242g00005 205 Pfam Ubiquitin elongating factor core 26 90 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Mupr11242g00005 205 ProSiteProfiles U-box domain profile. 106 180 IPR003613 GO:0004842|GO:0016567
Mupr11242g00005 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 184 IPR013083 -
Mupr11242g00005 205 PANTHER UBIQUITINATION FACTOR E4 26 182 IPR045132 GO:0000151|GO:0030433|GO:0034450
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11242g00005 27 205 U-box Gene Family AT5G15400 75.419 1.26e-87 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11242g00005 K10597 - gmx:100806175 326.635