Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1123g00003 ATGGCGACGGGGAGTAAGAAGAAGGCATCGCCTCTCTCTTTGCAGCAATTCATCTCTATTACAGCTCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATTTCAACCTCAATCGCCACCGGTGCGTCCAGGAATTTGGATACTGCTCAAAAGAGGGGTTCCACAATCCTCAACTTGAAGTGCGTGGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATTGAGTTCCAGTCTACAAAAGGAGATGTACTTCCTGCACACAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTAGTTTACAGGCTAAAGGACTCATCAATAACTGTTGCTTTTGATGATATACCAGAAGATGGTTTAAACAGTCCTCTAAGGCTGGAAAAAGTAGCGAATGAGGTGACATATCGCAGGATGAAAGACGCATTGATACAGTTGAGTAAAGGAGTGCACAAGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCCACCAACAGTGTCCAAGAAGGATGTATCCTTCACTCCCTTTAATATCAATCTTGATCACTCTCAGAAAGAAGCAGTTTCGAAAGTTCTATCATCAAAGAATGTGTTCTTGCTGCATGGACCACCTGGAACAGGAAAAACTACGACAGTTGTAGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTTGCTTGTGCTGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGGCTAGTTCCACATAGAGTTAAGCTGGTGAGACTGGGTCATCCCGCACGGTTATTGCCTCAAGTACTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTGCTGAAAACCAAAGACAGAAATACAAGAAAGGACATACAAAAGGAACTTAGGACTCTATCGAAAGAAGAACGTAAAAGACAGCAGCTTGCTGTAACAGATGTACTTAAAAGTGCTGATGTAATATTAACCACTTTGATTGGGGCTTTCTCTAAGAAACTGGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGATCATCTTCAACTTCCTCCGACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACACTCTTTGAACGACTTGCAGAAATGTATGGAGATGAAATCACATCGATGCTTACTGTCCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATCCAAGTGTTGCTGCACATATGTTATATGATCTTGAGGGTGTGAAGCGGACATCTTCAACTGAACCGACTCTTCTTCTCATAGACACAGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGTACCTTTAATGAAGGTGAAGTTGAGGTTACTGTGGCTCATGCAAAGAGATTAGTCCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACTCCATATGCTGCCCAGGTTGTTTTACTCAAGATGTTGAAAAACAAGGAGGACCGGCTGAAGGATGTTGAAATCTCAACAGTTGATGGTTTCCAGGGAAGGGAGAAGGAAGCCATCATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTTGGCTTTCTGAGTGATCGGCGGCGAATGAATGTGGCTGTGACACGGTCTAGAAGGCAATGCTGTCTTGTCTGTGACACAGAGACAGTCAGTGGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCATGGTGAATATATGAGTGCATCTGAGTACCAGAATGAGTAG 1941 0.4266 MATGSKKKASPLSLQQFISITAPLLDLEKEAEISTSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPASDLIPVLFGERPPTVSKKDVSFTPFNINLDHSQKEAVSKVLSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQKELRTLSKEERKRQQLAVTDVLKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEITSMLTVQYRMHELIMDWSSKELYNSKIKAHPSVAAHMLYDLEGVKRTSSTEPTLLLIDTAGCDMEEKKDEEDSTFNEGEVEVTVAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEDRLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRSRRQCCLVCDTETVSGDGFLKRLIEYFEEHGEYMSASEYQNE 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1123g00003 646 Gene3D - 442 646 IPR027417 -
Mupr1123g00003 646 SMART ultradead3 192 443 IPR014001 -
Mupr1123g00003 646 Pfam AAA domain 196 410 IPR041677 GO:0004386
Mupr1123g00003 646 FunFam P-loop containing nucleoside triphosphate hydrolase 442 646 - -
Mupr1123g00003 646 NCBIfam IGHMBP2 family helicase 343 640 IPR004483 GO:0003677|GO:0005524
Mupr1123g00003 646 Gene3D - 23 426 IPR027417 -
Mupr1123g00003 646 CDD DEXXQc_SMUBP2 195 443 - -
Mupr1123g00003 646 Gene3D - 40 142 - -
Mupr1123g00003 646 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 13 645 - -
Mupr1123g00003 646 Pfam AAA domain 419 615 IPR041679 -
Mupr1123g00003 646 SMART AAA_5 210 462 IPR003593 GO:0016887
Mupr1123g00003 646 Coils Coil 297 317 - -
Mupr1123g00003 646 FunFam DNA-binding protein SMUBP-2 40 142 - -
Mupr1123g00003 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 631 IPR027417 -
Mupr1123g00003 646 CDD SF1_C_Upf1 444 632 IPR047187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1123g00003 Mupr-Chr1123 21706 28964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1123g00003 169 379 Core DNA Replication Machinery Family AT1G08840 26.066 4.50e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1123g00003 - K19036 gmx:100810545 1210.67