Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11220g00004 GCGAGGTGGAGGTTGGAAGGGCCATACATTCCCAAACAAGAGCTTGGCCACCCTTATCATCTCCTTCTCTCATTTTTCTCTATTCGCCACTATCGTCTCTTCGACACCAAAAAAATGGCTTCTATCATAGGTGTCTCCTCCATTTACCAAACTCCATCTCTCGAACTATACCAGAGGCCAAACACTACTTCCACTTCCTCAGTTAGGTTGCAATGTTTAGACTCCAAGTCCCACTTCAACAACGTTCTCAGAGCCCACCGCCACACCACTGGCCCCAACTTCAAAACGGGCCTCAAGCCCACACTGACTTTCGTTCCCTCCGCCGTCGCCACGCCCAATTCCTCCCTCCTTAGCGAAGAAGCCTTCAAAGGACTGGGCCGCGGCTTCGACCAAAACGACGACGAATTCGGCCTTGCCGCCGCCGCCCCCGCCGAATCCGCCAACCCTGACGAACTCGACGTTTCCAAGCTCAACTTGCCCCCGCGCCTCGTCGAATCCCTCCAGGGCCGTGGGATTACTCACCTTTTCCCCATTCAGAGAGCGGTGTTAGTACCTGCACTAGAAGGTAGAGATATCATTGCTCGAGCGAAGACCGGGACCGGAAAGACACTAGCGTTCGGGATTCCAATTATTAAAGGCCTCACTGAAGATGAGAATGCACCTTCTCATAGGCGTTCTGGTCGGCTTCCTAGAGTTTTGGTCCTTGCACCTACCAGGGAGTTAGCGAAGCAGGTGGAGAAAGAGATAAAGGAATCTGCGCCTTATCTCAGCACTGTTTGTGTTTATGGGGGTGTTTCTTATGTTACTCAGCAGAGTGCACTTACGCGTGGCGTTGATGTGGTGGTTGGAACACCAGGTAGAATAATTGACCTCATAAATGGGAACAGCCTCAAGCTGAGTGAGGTTCAGTATTTGGTTCTTGATGAAGCTGACCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTAGAAAAACTCCCATCACAGAGGCAGAGCATGCTTTTCTCTGCAACCATGCCTGGTTGGGTGAAGAAATTGGCAAGAAAATATTTGGACAACCCACTGACAATCGATTTGGTTGGTGATGAAGAAGAAAAACTTGCTGAAGGGATAAAACTTTATGCTATAGCAGCCACTGCCACCTCAAAACGGACAATTCTTTCTGATCTTATAACTGTATATGCAAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAATGTCTGAAGCACTGCATGGTGATATATCTCAACATCAAAGGGAGAGAACATTGAATGGTTTCCGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACTTTCGTGCATCGCTCTGGTCGTACTGGGCGTGCAGGAAAACAAGGTACTGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAACGTGATGTAGGCTGCCATTTTGAATTTGTTAGTCCACCAGCTATGGAAGAGGTTTTGGGGTCATCTGCTGAGCAAGTTGTTGCGACACTTAATGGAGTTCATCCCGAGTCTGTTGAGTTTTTCACCCCAACTGCACAAAAACTGATCGAAGAACAAGGAACAAGTGCCCTTGCAGCTGCACTTGCTCAACTGAGTGGATTCTCCCGACCTCCATCATCCCGGTCTCTTATCACCCACGAACAGGGATGGATTACATTGCAACTAACTCGAGATTCAGATAATAGAAGATATTTTTCGGCAAGATCAGTCACTGGGTTTCTTTCAGATGTTTATCCTGCAGCAGCTGATGAAGTTGGAAAAATCCATATAATTGCAGATGAAAAGGTTCAAGGAGCCATTTTTGATCTTCCCGAGGAAATTGCTAAAGAGTTACTTAATAGGGACATTCCACCTGGAAGCACCATTTCCAAGGTCACCAAGCTACCGCCTTTGCAAGATGACGGGCCTCCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGATCGAAGTAACAGAAGAGGTTCTACTTCTCGGGGAGGCTTTTCTTCTAGGGGAGGTTTTGCTTCAAGGGACCGGAGAGGTTTTAAAACCTCACGGGGATGGGATGGGGACCAAGACTCTGATGATGATGACTTTGGTGATCGATCTAGGAGAGGTGGTAGAAATTTTAAATCTGGTGGCAACAGCTGGTCTCGAGCAGGAAAAAGCAGTGGGGATGATTGGCTAATTGGAGGTAGACGATCAAGCAGGCCTTCATCATCAGACAGCTTTGGAGGGACCTGTTTTAATTGCGGGGAATCTGGTCATCGTGCATCAGATTGTCCAAATACTTCAAACAACAGGCGAAGCTTTTTTTAA 2442 0.4705 ARWRLEGPYIPKQELGHPYHLLLSFFSIRHYRLFDTKKMASIIGVSSIYQTPSLELYQRPNTTSTSSVRLQCLDSKSHFNNVLRAHRHTTGPNFKTGLKPTLTFVPSAVATPNSSLLSEEAFKGLGRGFDQNDDEFGLAAAAPAESANPDELDVSKLNLPPRLVESLQGRGITHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDENAPSHRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQSALTRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILEKLPSQRQSMLFSATMPGWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVRSLERDVGCHFEFVSPPAMEEVLGSSAEQVVATLNGVHPESVEFFTPTAQKLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSDNRRYFSARSVTGFLSDVYPAAADEVGKIHIIADEKVQGAIFDLPEEIAKELLNRDIPPGSTISKVTKLPPLQDDGPPSDFYGKFSDRDRSNRRGSTSRGGFSSRGGFASRDRRGFKTSRGWDGDQDSDDDDFGDRSRRGGRNFKSGGNSWSRAGKSSGDDWLIGGRRSSRPSSSDSFGGTCFNCGESGHRASDCPNTSNNRRSFF 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11220g00004 813 FunFam Nucleolar RNA helicase II 382 572 - -
Mupr11220g00004 813 MobiDBLite consensus disorder prediction 717 731 - -
Mupr11220g00004 813 Pfam Helicase conserved C-terminal domain 386 494 IPR001650 -
Mupr11220g00004 813 SUPERFAMILY Retrovirus zinc finger-like domains 775 810 IPR036875 GO:0003676|GO:0008270
Mupr11220g00004 813 MobiDBLite consensus disorder prediction 775 789 - -
Mupr11220g00004 813 MobiDBLite consensus disorder prediction 798 813 - -
Mupr11220g00004 813 CDD DEADc 163 361 - -
Mupr11220g00004 813 Gene3D - 760 812 - -
Mupr11220g00004 813 SMART c2hcfinal6 788 804 IPR001878 GO:0003676|GO:0008270
Mupr11220g00004 813 Pfam Zinc knuckle 787 804 IPR001878 GO:0003676|GO:0008270
Mupr11220g00004 813 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 147 733 - -
Mupr11220g00004 813 Gene3D - 153 364 IPR027417 -
Mupr11220g00004 813 ProSiteProfiles Zinc finger CCHC-type profile. 789 804 IPR001878 GO:0003676|GO:0008270
Mupr11220g00004 813 MobiDBLite consensus disorder prediction 663 813 - -
Mupr11220g00004 813 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 360 IPR014001 -
Mupr11220g00004 813 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 389 534 IPR001650 -
Mupr11220g00004 813 Pfam GUCT (NUC152) domain 581 680 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mupr11220g00004 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 515 IPR027417 -
Mupr11220g00004 813 FunFam ATP-dependent RNA helicase RhlE 144 363 - -
Mupr11220g00004 813 Pfam DEAD/DEAH box helicase 176 349 IPR011545 GO:0003676|GO:0005524
Mupr11220g00004 813 Gene3D - 378 570 IPR027417 -
Mupr11220g00004 813 MobiDBLite consensus disorder prediction 688 702 - -
Mupr11220g00004 813 SMART helicmild6 414 494 IPR001650 -
Mupr11220g00004 813 CDD SF2_C_DEAD 374 503 - -
Mupr11220g00004 813 CDD GUCT_Hera 588 667 - -
Mupr11220g00004 813 SMART ultradead3 171 377 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11220g00004 Mupr-Chr11220 38335 43964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11220g00004 106 516 Eukaryotic Initiation Factors Gene Family AT1G72730 34.762 2.35e-64 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11220g00004 - - gmx:100779706 1263.44