Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr11170g00003 | ATGTCGAATAGGGTTTGCAAGTTCTATGCCCGTGGAGCATGTTTAAAAGGGGAGCAATGTGATTTTTCTCATGAGAGAAAGGATGATATTTGCAGCTATTATCAAAAAGGATTGTGTGCTTATGGTAGTAGATGCAGATATAAGCATGTCAAAGCTTCTCAAGCATCATCATCAGCAAATGGACACCAATCTCCTGTTTTGGATTCTGTTGTCAGTCATTCTACTAGAGGAATGTCAAGTTGGGTTCCAAAGGCTGGGAAGTCATCTTCATTGGACAAGCGTGTAAGGAGTTCACAGCATAAAAATCTGGCCTCTCTAGGGATTGATGTTGGTGAATCCAGTACTAGTAGTGTTATACCGTCTGAACGTTTGTTTTGCGCATTTGCTGCTGCCAACTGCCCCCTTGGAGATAAATGTTCTCGCGTACATGGAAATCAATGTTTATACTGTAGAAAATTTTGCTTACATCCTACTGATCGAAAGGAAAAGGAAAATCATTTGAGGACTTGTGAGAAAAAGGAAAACTACCTTCAGGCTTTGAAAGATAGTCAAGAAGTAGAGTGCAATGTTTGTTTGGAGCGTGTTCTTTCCAAACCTAAACCATCTGATTGTAAGTTTGGGCTGCTTCCTGAATGTGACCATGCTTTCTGTTTATCCTGTATCCGCAACTGGCGTAATAGTGCCCCGACCTCTGGAATGGATTTCAATAATACTGCAAATACAGTGAGAACCTGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAGGAAATTATTGACAACTACAAGGCAAACTGCAAACTAATTGATTGCAAGCATTTTAACTTTGGAAATGGGAATTGTCCATTCGGGATTAGTTGTTTCTACAAGCATACAGTGAAGCCTGGCTCGTACACATGGATACATAACAGGCCACCACCTCAACGTAGACAAAACAATTTTGATATGTATGACATGTTGGACATCCTCAGCGATGTTGATTTATCAAGTGCGGAATACTATTCCATCATGAGGGACTCTGACTTTTTTGATGATATGGATCCATTCGAGATGATGGCTATGTCAGATAGGCTTGCTGGTGAATCAGGTCCTTGTTTGGGTCCTTTTGATTCTGATGAGGAGGACATGGATATTTTTCAGATGGCTGCATTGTCAGAAGCACTGGGTTCTGGTGTGGATGATTTTGGCCCCGAAGATTTTGACGGTGAAGAATTCAATCCTATGGAGGCAGCCTTCTTATCAATGATGATGCATTCTAATATAGAAGAGGATGATGAAGAAGACAACCAAGTTAGCAAGGTTGGCAATATTATCCACAGAGTTGGAAAGATCCTGCACTTCAAACATATTAACAGAGTTGGATACATCCGTCACAGAATTGAGACAGTCGGTTACATCAGAATCTTTTTGATAGCATCGAGGAGAGGAATGTTGATCTCCACCATTCTGAACATCTTCAGCAATTCCTCATCTGTTTCAAATTTCCTTGCTAGGACTGTTCGG | 1542 | 0.406 | MSNRVCKFYARGACLKGEQCDFSHERKDDICSYYQKGLCAYGSRCRYKHVKASQASSSANGHQSPVLDSVVSHSTRGMSSWVPKAGKSSSLDKRVRSSQHKNLASLGIDVGESSTSSVIPSERLFCAFAAANCPLGDKCSRVHGNQCLYCRKFCLHPTDRKEKENHLRTCEKKENYLQALKDSQEVECNVCLERVLSKPKPSDCKFGLLPECDHAFCLSCIRNWRNSAPTSGMDFNNTANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFNFGNGNCPFGISCFYKHTVKPGSYTWIHNRPPPQRRQNNFDMYDMLDILSDVDLSSAEYYSIMRDSDFFDDMDPFEMMAMSDRLAGESGPCLGPFDSDEEDMDIFQMAALSEALGSGVDDFGPEDFDGEEFNPMEAAFLSMMMHSNIEEDDEEDNQVSKVGNIIHRVGKILHFKHINRVGYIRHRIETVGYIRIFLIASRRGMLISTILNIFSNSSSVSNFLARTVR | 514 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr11170g00003 | 514 | ProSitePatterns | Zinc finger RING-type signature. | 212 | 221 | IPR017907 | - | |
| Mupr11170g00003 | 514 | Gene3D | - | 1 | 27 | - | - | |
| Mupr11170g00003 | 514 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 159 | 254 | IPR013083 | - | |
| Mupr11170g00003 | 514 | SUPERFAMILY | CCCH zinc finger | 3 | 25 | IPR036855 | GO:0046872 | |
| Mupr11170g00003 | 514 | SMART | ring_2 | 188 | 248 | IPR001841 | - | |
| Mupr11170g00003 | 514 | ProSiteProfiles | Zinc finger C3H1-type profile. | 25 | 52 | IPR000571 | GO:0046872 | |
| Mupr11170g00003 | 514 | Pfam | RNA-binding, Nab2-type zinc finger | 126 | 144 | - | - | |
| Mupr11170g00003 | 514 | Pfam | RNA-binding, Nab2-type zinc finger | 6 | 24 | - | - | |
| Mupr11170g00003 | 514 | Pfam | RNA-binding, Nab2-type zinc finger | 283 | 304 | - | - | |
| Mupr11170g00003 | 514 | Pfam | CCCH-type zinc finger | 30 | 49 | IPR041367 | - | |
| Mupr11170g00003 | 514 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1 | 24 | IPR000571 | GO:0046872 | |
| Mupr11170g00003 | 514 | CDD | RING-HC_MKRN | 186 | 249 | - | - | |
| Mupr11170g00003 | 514 | SMART | c3hfinal6 | 278 | 306 | IPR000571 | GO:0046872 | |
| Mupr11170g00003 | 514 | SMART | c3hfinal6 | 27 | 51 | IPR000571 | GO:0046872 | |
| Mupr11170g00003 | 514 | SMART | c3hfinal6 | 2 | 26 | IPR000571 | GO:0046872 | |
| Mupr11170g00003 | 514 | SMART | c3hfinal6 | 121 | 145 | IPR000571 | GO:0046872 | |
| Mupr11170g00003 | 514 | SUPERFAMILY | CCCH zinc finger | 24 | 49 | IPR036855 | GO:0046872 | |
| Mupr11170g00003 | 514 | PANTHER | MAKORIN-RELATED | 1 | 357 | IPR045072 | GO:0000209|GO:0061630 | |
| Mupr11170g00003 | 514 | ProSiteProfiles | Zinc finger C3H1-type profile. | 278 | 307 | IPR000571 | GO:0046872 | |
| Mupr11170g00003 | 514 | SUPERFAMILY | RING/U-box | 179 | 255 | - | - | |
| Mupr11170g00003 | 514 | ProSiteProfiles | Zinc finger RING-type profile. | 188 | 249 | IPR001841 | - | |
| Mupr11170g00003 | 514 | Gene3D | - | 28 | 78 | - | - | |
| Mupr11170g00003 | 514 | Pfam | Zinc finger, C3HC4 type (RING finger) | 188 | 248 | IPR018957 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr11170g00003 | Mupr-Chr11170 | 26973 | 34543 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Mupr11170g00003 | zf-C3HC4 | 5e-07 | CL0229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr11170g00003 | K15687 | - | gmx:100788886 | 813.142 |