Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11167g00001 ATGGCATCAACATCTTGCGTTGGTAAGAGCTCATTGCCCATGAAAGATGCAGCTTCAAACTATCGTCCATATCCTTTTGCTCTTGCAAAATATGAGGAGGTTGTAGACAATCCCCAGCTCTTCATGTTTACCTTGGAGAAGCTTCACGTTTCTATGGGTACCAAGTTCATGATTCCCATTGTTGGAGGAAGAGAACTAGATTTACATCGTCTCTTTGTTGAAGTGACTTCTCGAGGAGGGATTGCGAAGATAATTAGAGAGAGGAAATGGAAAGACGTAACGTCAGTCTTCAATTTTCCATCAACAGCTACAAATGCTTCATTTGTGTTGCGGAAGTACTATGCTTCGTTGCTCTACCATTATGAACAAATATACTATTTTAAAGCCCGTGAATGGGACCCTACCGCTCCTGATGTTTTGCAGAATCAATCAACACTGCCAGTTCCTCCTCCCCCCAAAATGCAGTTTGTGCAGCCTTCCCCAGAAATTCAACCAGCTGTCTTTCAACAGTCAAATGTTAATGCTGCTAAATTGCCTGAAGTAATGGCAGCATCTTCGGCAGGGTCTCCAGTCATTGGGGTCATTGATGGGAAATTCGAAAGTGGGTATCTAGTTACTGTCACAATTGGTTCAGAGAAACTCAAAGGTGTACTTTATCAAGCTCCACAAAATTCTGTATTGCCAGCATCCCATCATAGTGCCTTGGCTAATAACAACAATGCTTCTGCATCATTGGGTGTCCATCGTCGGCGACGCAGGAAGAAATCAGAAATAAAAAGGAGGGATCCTGCTCATCCAAAACCCAATAGAAGTGGTTACAATTTCTTCTTTGCCGAACAGCATGCAAGACTAAAGCTACTTCACCATGGAAAGGACAGAGAGATTAGTAGGATGATTGGTGAACTCTGGACAAAGTTAAAAGAATCAGAAAAGACGGTTTATCAAGAGAAGGCCATGAAGGATAAAGAGAGGTACAGAGCAGAAATGGAGGATTATAGGGAGAAACTGAAGATGGGGCAAGTTATCAGTCATGCTGTGCCACTTCAACAACGACTTCCGGAACCGGATACAGAAATGTTAGATGACATAAAAATAGATGAAGCTGAGGCAGATTCTGCTCAAACTCCAGAGGAGAGCAGTTCTGGTGGAAGTGACTATGAAGATTATAATAATAAAGGTTCAGAGAGAGGTTTTGATATGGATGCATTGCCTGTTATAGGCTTGGGCGCTGAACCAAGCTATTTGGGTTCAGAAGACAAGTCATCCAAGGGGGGGTCTCCAGTGATTGGGGTAATCGATGAAAAATTTGAAAGTGGGTATCTAGTTACTGTCACAATTGGTTCAGAGAAACTCAGAGGTGTACTTTATCATAGTGCCTCGGCTAATAACAAGAATGTTTCTGCTTCATCGGGTGTCCATCGTGGCAGGAAGAAATCAGAAATAAAGGTGAGAGATCCTTCTCATCCAAAACACAACAGAAGTGCTTATAATTTCTTCTTTGCCGAACAGCATGCAAGACTAAAACTACTTCACCATGCAAATGACAGAGGGATTAGTGGGATGATTGCTCAACTCTGGACTAAGATAACACAATCAGAAAAGATGGTTTATGAAGAGAAGGCCATGAAGGATAAAGAGAGGTACAGAGCTGAAATGGAGGATTATGGGGAGAAACTGAAAGTGAAAGTGAAGATGGGACAAGTTATCACCGACGCTGTGCCACTTCAACAACTACCTCCTGGTGGAAGTGAGTATGAAGAATATTATAATGAAGGTTCAGAGATAGGTTTTGATATGGGAGTGGGCGCTTCAACAAGCTATTTGGGTTCAGAAGACGAGTCATCCAAGGGAGAGATTTTCGCACACAGATTTCTTATGATAATTTAG 1887 0.4224 MASTSCVGKSSLPMKDAASNYRPYPFALAKYEEVVDNPQLFMFTLEKLHVSMGTKFMIPIVGGRELDLHRLFVEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYYFKAREWDPTAPDVLQNQSTLPVPPPPKMQFVQPSPEIQPAVFQQSNVNAAKLPEVMAASSAGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNSVLPASHHSALANNNNASASLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLHHGKDREISRMIGELWTKLKESEKTVYQEKAMKDKERYRAEMEDYREKLKMGQVISHAVPLQQRLPEPDTEMLDDIKIDEAEADSAQTPEESSSGGSDYEDYNNKGSERGFDMDALPVIGLGAEPSYLGSEDKSSKGGSPVIGVIDEKFESGYLVTVTIGSEKLRGVLYHSASANNKNVSASSGVHRGRKKSEIKVRDPSHPKHNRSAYNFFFAEQHARLKLLHHANDRGISGMIAQLWTKITQSEKMVYEEKAMKDKERYRAEMEDYGEKLKVKVKMGQVITDAVPLQQLPPGGSEYEEYYNEGSEIGFDMGVGASTSYLGSEDESSKGEIFAHRFLMII 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11167g00001 628 MobiDBLite consensus disorder prediction 242 273 - -
Mupr11167g00001 628 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Mupr11167g00001 628 MobiDBLite consensus disorder prediction 246 260 - -
Mupr11167g00001 628 SUPERFAMILY HMG-box 476 560 IPR036910 -
Mupr11167g00001 628 FunFam High mobility group B protein 15 29 142 - -
Mupr11167g00001 628 FunFam High mobility group B protein 15 248 343 - -
Mupr11167g00001 628 SUPERFAMILY HMG-box 254 337 IPR036910 -
Mupr11167g00001 628 Gene3D - 27 136 IPR036431 GO:0003677
Mupr11167g00001 628 SMART bright_3 36 127 IPR001606 GO:0003677
Mupr11167g00001 628 CDD HMG-box_AtHMGB9-like 266 332 - -
Mupr11167g00001 628 MobiDBLite consensus disorder prediction 374 388 - -
Mupr11167g00001 628 MobiDBLite consensus disorder prediction 367 394 - -
Mupr11167g00001 628 SMART hmgende2 488 557 IPR009071 -
Mupr11167g00001 628 SMART hmgende2 265 334 IPR009071 -
Mupr11167g00001 628 Gene3D High mobility group box domain 250 344 IPR036910 -
Mupr11167g00001 628 Gene3D High mobility group box domain 474 570 IPR036910 -
Mupr11167g00001 628 MobiDBLite consensus disorder prediction 465 489 - -
Mupr11167g00001 628 Coils Coil 315 335 - -
Mupr11167g00001 628 MobiDBLite consensus disorder prediction 473 489 - -
Mupr11167g00001 628 SUPERFAMILY ARID-like 34 134 IPR036431 GO:0003677
Mupr11167g00001 628 Coils Coil 538 558 - -
Mupr11167g00001 628 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 333 IPR009071 -
Mupr11167g00001 628 SMART ARID_2 32 122 - -
Mupr11167g00001 628 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Mupr11167g00001 628 CDD HMG-box_AtHMGB9-like 489 555 - -
Mupr11167g00001 628 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 489 556 IPR009071 -
Mupr11167g00001 628 Pfam HMG (high mobility group) box 266 333 IPR009071 -
Mupr11167g00001 628 Pfam HMG (high mobility group) box 489 555 IPR009071 -
Mupr11167g00001 628 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 379 - -
Mupr11167g00001 628 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11167g00001 Mupr-Chr11167 11862 21205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11167g00001 422 577 ARID Transcription Factor Family AT1G04880 58.333 1.82e-48 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mupr11167g00001 ARID 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11167g00001 - - gmx:100783284 735.717