Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11166g00001 ATGCCGTCGCTTCTCTCTCCGGGGAAAATCCACAGTCTGGAGATTGAGAATTTCAAGTCATACAAGGGCTTCCAAGTGATCGGTCCCTTCTACGACTTCACCGCCATCATCGGTCCCAACGGCGCCGGCAAGTCCAACCTCATGGACGCCATCAGCTTCGTTCTTGGCGTCCGCACCGGCCACCTTCGCGGCGCCCAACTCAAGGACCTCATCTACGCCTTCGACGACCGCGAGAAGGACCAGAAAGGACGCAAAGCCTTCGTTCGCCTCGTCTACCACCTCGCCAACTCCACCGAGATCAAATTCACCCGCACCATCACCACCGCCGGCGCCAGCGAGTATCGCATCGACGGCGCCCTCGTCAACTGGGACGCCTACAACGCCAGACTTAAGTCCCTCGGCATTCTCGTCAAAGCTCGCAATTTCTTGGTCTTTCAGGGGGATGTGGAGTCCATTGCATCGAAGAATCCCAAAGAGCTCACTGCACTGGTGGAGCAGATATCTGGCTCTGACGAGTGCAAGAGGGAGTATGAGCAGTTTGAGGAGGAAAAAGGCACTGCTGAGGAAAAATCAGCACTTGTTTACCAGAAGAAGAAGACAGTGGTTATGGAGAGAAAGCAGAAGAAAGAACAGAAGGAAGAAGCAGAGAAACATATCCGCCTGCAAAAAGAACTGAAATCTGTGAAGGAAGAACATTTCTTGTGGCAGCTGTTTAATATACACAACGATTATGTTAAAACAATTAACGATCTTGTAGATGAGGAAAAAAGTCGTGAAGGCGTTGTTAGAGAACTAGAAAATTTTGAAAATGAAGCTGGTAAGAAGAAAAAAGAGCAGGCCAAATATCTGAAAGAGATTGCACTACGTGAAAAGAAAATTACTGAGAAAAACAACAAGCTTGACAAGAGACAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATCAATTCAAAAATTAAAAAAGGAAAGAAAGAGCTTGATAAAAAAGAGGAAGAACGGAGGAAGCATGCTGCTGTTATAGCAGAGTTACAGAATGGCATCCAAGATCTTACAGGGAAAATGACAGTCCTACAGGAAAAGGGTCGAGATGTTGGTGATCAGCTCCAGTTGGATGGCAATGACTTGGAAAAATATTTTGAAATCAAAGAGGAAGCTGGGATGAAAACGGCAAAGCTTAGAGAGGAAAAAGAGCTTCTTGATAGGCAACAACATGCTAATAGTGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGACTCTGAACTGAATTCACAGGAAGAACAGATGCGGACAAGGCTTAAAAAAATTCTTGATAATTCTACAAAAAATAAAGATGACCGTGAAAACTTGAAAAAAGAACTACGTGTGATGCAGGACAAACATCGTGATTCCAAGAAAAAATATGAAAATTTGAAGTTAAAAATTGGTGAATTGGAAAATCAACTACGTGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATGCTAAATTGTCTCAGGCTGTTGAGACTCTGAAACGCCTGTTCCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAAAAGTATAACCTAGCTGTTACTGTTGCAATGGGTAAATTTATGGATGCAGTTGTAGTTGAAGATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGCAATCAATCCGGGTGAAGCCAATAATGGAAAGATTGCGTACATTAGGGGGTACAGCAAAACTGTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTTGTTTGTGATGATCTTGAGGAGGCAAAAATTTTAAGCTGGAGTGGTGAGAGGTTTAAAGTTGTAACTGTTGATGGAATTCTGCTGACAAAATCTGGCACAATGACTGGAGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAGTATGAATCAGAGTTGGAACAGCTAGGGTCAATAAGAGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGGCTCGAGAAGAAGATTCAATATGCTGAGATTGAAAAGCGAAGCATTGAAGATAAACTTTCAAATTTGAGCCAAGAAAAAGAGACCATCAAAGAAAGAATTGAACATATCATTCCAGAACTGCAGAAGTTAAATGATGATATTAACAAGAAGAATGCAGACATTTCTAAGCGTGAGAAGAGGATAAATGAAATTACTGATAGGATATACAGAGACTTCAGCAAGTCAGTTGGGGTAGCAAACATCCGCGAATATGAAGAAAATCGACTCAAGGATGCTCAGAATGTAGCAGAGGAGAGGCTGAAGCTGAGTAGTCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGACATGAGTTCAAGAATTCAAGAATTGAAATCTTCTCTAAGTGCTTTAGAGAAAGATTTAAAACGGGTACAGGACCGAGAGGCTGAAGCAAAGTTAGAAGCCGAGAATGGTACTGAAGAGATTGATAAATTTAAGGAAGAAGCTAAAGAGTGGAAATCGAAGTCAGAAGATTGTGAAAAGGAAATCCAAGAGTGGAAGAAGAAAGCTTCCGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATAAACTCTAAGGAGGCACAGCTTCAGCAGTTGAGTGTGCAAAAGCAGGAAATATTAGAAAAGTGTGAACTAGAACAGATTAGCCTTCCGATCATACCAGATCCTATGGATACTGATAACTCAGTACCAGGTCCAGTTATTGTGTTTGATCAACTAAGTAGGGCACTGAAAGATAGGAGACACTCTGACAGGGATAAAATTGAAGTAGAGTTTAAGCAAAAAATGGATGCTTTGATATTTGAGATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAGGCCCTGCTAGAAAAAGAAAAAGCTGTAACTGAAGAGTTTGAGGCTGTCAGGAAAGAGGAACGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGACAAGGTACAACCTGTTCATGGATGCTTTCAACCATATATCTAGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAATACACATCCCCTGGGGGGAACAGCATACCTTAACTTGGAAAATGACGATGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAGCTATCTGGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCACAGTTATAAACCTTCACCGTTTTTTATACTGGACGAAGTTGATGCTGCGTTGGACAACTTGAATGTCGCCAAGGTTGCTAGTTTTATTCGTTCAAAATCTTGTGAAGGAGCGAGGGTTAGTCAGGATGCTGATGGTGGAAATGGTTTTCAGAGTATTGTGATATCACTGAAAGACACGTTTTATGACAAAGCCGAAGCGTTAGTTGGGGTTTACAGAGACTCTGAAAGAGGTCCTCGTAAAACTCATGGGCATAACGATTGA 3624 0.4172 MPSLLSPGKIHSLEIENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGHLRGAQLKDLIYAFDDREKDQKGRKAFVRLVYHLANSTEIKFTRTITTAGASEYRIDGALVNWDAYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKREYEQFEEEKGTAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHIRLQKELKSVKEEHFLWQLFNIHNDYVKTINDLVDEEKSREGVVRELENFENEAGKKKKEQAKYLKEIALREKKITEKNNKLDKRQPELLKLKEEMTRINSKIKKGKKELDKKEEERRKHAAVIAELQNGIQDLTGKMTVLQEKGRDVGDQLQLDGNDLEKYFEIKEEAGMKTAKLREEKELLDRQQHANSEAQKNLEENLQQLRNRDSELNSQEEQMRTRLKKILDNSTKNKDDRENLKKELRVMQDKHRDSKKKYENLKLKIGELENQLRELKADRYENERDAKLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRTLGGTAKLCKFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESELEQLGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLSQEKETIKERIEHIIPELQKLNDDINKKNADISKREKRINEITDRIYRDFSKSVGVANIREYEENRLKDAQNVAEERLKLSSQLSKLKYQLEYEQNRDMSSRIQELKSSLSALEKDLKRVQDREAEAKLEAENGTEEIDKFKEEAKEWKSKSEDCEKEIQEWKKKASAATTNISKLNRLINSKEAQLQQLSVQKQEILEKCELEQISLPIIPDPMDTDNSVPGPVIVFDQLSRALKDRRHSDRDKIEVEFKQKMDALIFEIERTAPNLKALDQYEALLEKEKAVTEEFEAVRKEEREKTQRFNEVKQTRYNLFMDAFNHISSNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVASFIRSKSCEGARVSQDADGGNGFQSIVISLKDTFYDKAEALVGVYRDSERGPRKTHGHND 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11166g00001 1207 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1197 - -
Mupr11166g00001 1207 Coils Coil 170 190 - -
Mupr11166g00001 1207 Coils Coil 825 929 - -
Mupr11166g00001 1207 Pfam RecF/RecN/SMC N terminal domain 10 1194 IPR003395 -
Mupr11166g00001 1207 Coils Coil 705 739 - -
Mupr11166g00001 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 268 IPR027417 -
Mupr11166g00001 1207 Coils Coil 251 285 - -
Mupr11166g00001 1207 Coils Coil 454 502 - -
Mupr11166g00001 1207 Coils Coil 394 439 - -
Mupr11166g00001 1207 Coils Coil 747 767 - -
Mupr11166g00001 1207 SUPERFAMILY Smc hinge domain 481 678 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mupr11166g00001 1207 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Mupr11166g00001 1207 Coils Coil 198 231 - -
Mupr11166g00001 1207 Gene3D - 578 656 - -
Mupr11166g00001 1207 Gene3D - 8 231 IPR027417 -
Mupr11166g00001 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1157 IPR027417 -
Mupr11166g00001 1207 Coils Coil 307 362 - -
Mupr11166g00001 1207 PIRSF SMC 8 1199 IPR024704 GO:0005524|GO:0016887
Mupr11166g00001 1207 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Mupr11166g00001 1207 Coils Coil 1000 1023 - -
Mupr11166g00001 1207 Gene3D - 1009 1203 IPR027417 -
Mupr11166g00001 1207 Pfam SMC proteins Flexible Hinge Domain 517 628 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mupr11166g00001 1207 Gene3D - 495 577 - -
Mupr11166g00001 1207 Coils Coil 671 691 - -
Mupr11166g00001 1207 SMART SMC_hinge_2 517 629 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11166g00001 Mupr-Chr11166 4336 19665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11166g00001 8 114 Structural Maintenance of Chromosomes family AT5G61460 31.579 2.50e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11166g00001 K06636 - gmx:100791953 2052.33