Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11156g00001 ATGGGTGATGTTCTAAGCCCCTTCACAATCTCATCCCCTCCTCCACCCTCTTCCCCATCGAGCAAAAACAACAGCATGCCCATGTTGTACTATGGCCTAGTGGTGGTGGGAACCGCAGCCATAGTGCTAGCCATATACAACCTGGTCCTCCTCAAACGGAGCCACACGCGCCACGCGCGGTCGCAGCCATCTGGACCAAATCGAGTTGAAGGGGTTTCGGAGAGAACGATGAGCTTGGACAACCAACATAGGAACTTGCTATCGAGCTTCAAGTACAAGAAACAAGTGTTGGCAAAAGAAGAAGAAGAAGATTATGAGTGCCCAGTTTGCCTTTCGGTTTACGAAGAAGGGGAAGAGGTGAGGAAGCTTCCCCAGTGCAAGCACTATTTCCACGTTATTTGCATAGACATGTGGCTTTACTCTCACTTCGATTGCCCCATTTGTAGAACCCCCGTTCACCCTTTCTCTTCGCCTCTAAATTCCCCCCATGTCTTCATGGAATCCATTGCTGTCTCTCTTGATTGA 525 0.4971 MGDVLSPFTISSPPPPSSPSSKNNSMPMLYYGLVVVGTAAIVLAIYNLVLLKRSHTRHARSQPSGPNRVEGVSERTMSLDNQHRNLLSSFKYKKQVLAKEEEEDYECPVCLSVYEEGEEVRKLPQCKHYFHVICIDMWLYSHFDCPICRTPVHPFSSPLNSPHVFMESIAVSLD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11156g00001 174 CDD RING-H2_EL5-like 106 149 - -
Mupr11156g00001 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 156 - -
Mupr11156g00001 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Mupr11156g00001 174 SUPERFAMILY RING/U-box 98 158 - -
Mupr11156g00001 174 MobiDBLite consensus disorder prediction 1 23 - -
Mupr11156g00001 174 Pfam Ring finger domain 106 149 IPR001841 -
Mupr11156g00001 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 155 IPR013083 -
Mupr11156g00001 174 SMART ring_2 107 148 IPR001841 -
Mupr11156g00001 174 FunFam RING-H2 finger protein ATL1 67 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11156g00001 Mupr-Chr11156 9410 9934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11156g00001 20 152 C3H Transcription Factor Family AT1G04360 32.414 1.62e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11156g00001 - - gmx:102662517 239.965