Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11139g00003 ATGCCACCGAAAACGGCGAAGCGAGGGTCAGCCTCTTCCGCCTCGAAGAGGGGTGGCAGAGGCAGCAGGGGAACCCCGAAGGGTGCGCAGAGCCAACAACAGCAGCAGCACCACGAAGCTGCGGGAGAGGCAGTGAAGGTTGAAGAGAAACAACCCATGGTTGTTGACGAGGAACAACACAAGGTGGTGGAAGAAGAGAACCCTGTGGTTGAAGAGAAACGGCTTGTGGTTGAAGAGAAAGAATCTGTTGTGGTTGTTGAGGATAAGTCTATTGACATGAACCAAATGGCTCCAGAGGCTGTGGAAGAAGCGTCCCATGTGACTAATGGGTTGTTGCCCGTGGCGAAGAATGATGAAGAGGAGGTTAAGGAGTCCATAGATGAATATGAGAAAGATGAACGCTTGGATTTGGAAGATAATGATCCTGAGTATGAAGCTGAGGAGTATGGCGGAGTTGATTATGATGAGAAGGAAATTGAGCAAGATGAGGGTCATGAGGTGGGAAATGAAGTAGAGGAAGAAGAAGCTGAAGATAATGTCGGTGAAGAAGAGGGTGATACAGGCGATGAAGAAGTTGAAGATGTTCATGATGAAATTGAGGGTGAAGAGGAGCATGAGCATGCTGGTGAGGAGCATGAGCATCCAGACTTTGCTGATGTGGAGGAAGAGGAGCACCGAGAAGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTTTTTGTTGGGGGCCTGGACAAGGATGCTACTGAGAGTGACCTGAGGAAGGTTTTTGGTGAAGTTGGAGTGGTTACAGAGGTCAGGTTAATGATGAATCCTCAGACAAAGAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCGAAACGAGCTGTATCAGAGCTAAGAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACGAAGGAAGCTTTAAAAGAGAAGTTGAAACATTATGGTGTTACAAATGTTGAGGATTTGACTTTGGTAGAAGATACTAATGATGAAGGAAAGAATCGTGGATTTGCGTTTTTGGAATTTTCCTCTCGTTCAGATGCTATGGATGCCTTTAAGCGATTGCAAAAGAGGGATGTCGTATTTGGAGTTGATAAGCCTGCAAAAATTTCTTTTGCAGATTCCTTTATTGACCCTGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCATTGCCTCCTTCATGGGATGAAGATTATGTCCGGAATCTTCTCAAGAAATATGGAGAGATTGAAAAGATTGAGCTTGCTAGGAACATGCCAGCTGCTCGTAGAAAGGACTATGGGTTTGTTACATTTGGCACCCATGATGCTGCTGTAAAATGTGCTGATAGCATTACGGGCACAGAGTTGGGTGAAGGGGACAAGAAGGCTAAAGTTAGAGCTAGGTTGTCAAGACCACTTCAGCGAGGCCGTGGAAAACATGTTAGTCGTGGGGATTATCGTTCTGGTCGAGGATCTGGAATTATGACGAGGCCTGCATGGAGCCGTCCTGCACCTCGTACTTTTCCTTCTCGTGGTGTAAGAGGAGTTGGAAGTCGTGCTCCACCTGTCAGACCAGTTAGTGTGAGAGATAGACGCCCTATCATGTCCATGCCAGCAAGAAGTAGGCCAGTGCCTCCTCCATCTAGATCTTATGATAGGAGACCAGTTGCTCCTCCATATCCAAAAAGTAGTATGAAGAGAGATTATGGTCGGCGTGAGGATATACCACCTCCAAGAAGTAGAGTTGCTGTAGATTATGGCTCAAGGGTGGCTTCTGAAAGACGACCATCTTACAGGGATTATCCTTCCCGTAATCCTGGCTACACTGAGCTCCCTAGAAGCACATCTCGCGCCGCACCAAGGAGAGGCTATGTGGATGATGGATATGGCCAAAGATTTGAGAGGCCTCCTCCTCCACCTCCTCCTCCGCATCTAAGTTACCGTGAAGGACGTTCCCGAGATTATGATGCTCTTTCTGGCTCAAAACGTTCTTATGCTTCTATAGATGATGTTCCTCCACGATATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGATTAGACTATGACTATGGTGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGACAGACTTGGTAGATCTAGTCTGGGATATGGTGGTGGCAGCAGAAGTTCTATTTCTGGTCAAGATTCACATGGGATGTATAGCAGTCGACAGGGAATGGGTTATGGAGGAGGTTCTTTTGGTGGTAGTGATGTTGGTGGCATGTTGGTGGCAGCTCATACTCATCAGTGTATTCTAGCAGGGGTGTGGGTGGTGGTAGCAGTTATATGGGTGGTGGTGGATCGGGATCTTATTATTGAGAGAGACCAGGCTAGAGATGCTACTTGTTTGATTAAGGCTTCATGGATTTTACCTGCTGAATTTATCAATAAGTTGGGTCTGAAGGCACTGGAAGCTATTGCCTATGGAATGGGGTCTAAGCTCTCCTCAAGCTCTTGTTTGGTAACTCCCTACATACATATGGAAGTTTAG 2595 0.4628 MPPKTAKRGSASSASKRGGRGSRGTPKGAQSQQQQQHHEAAGEAVKVEEKQPMVVDEEQHKVVEEENPVVEEKRLVVEEKESVVVVEDKSIDMNQMAPEAVEEASHVTNGLLPVAKNDEEEVKESIDEYEKDERLDLEDNDPEYEAEEYGGVDYDEKEIEQDEGHEVGNEVEEEEAEDNVGEEEGDTGDEEVEDVHDEIEGEEEHEHAGEEHEHPDFADVEEEEHREVVKERRKRKEFEVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVSELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKISFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRNLLKKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHVSRGDYRSGRGSGIMTRPAWSRPAPRTFPSRGVRGVGSRAPPVRPVSVRDRRPIMSMPARSRPVPPPSRSYDRRPVAPPYPKSSMKRDYGRREDIPPPRSRVAVDYGSRVASERRPSYRDYPSRNPGYTELPRSTSRAAPRRGYVDDGYGQRFERPPPPPPPPHLSYREGRSRDYDALSGSKRSYASIDDVPPRYADTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSLGYGGGSRSSISGQDSHGMYSSRQGMGYGGGSFGGSDVGGMLVAAHTHQCILAGVWVVVAVIWVVVDRDLIIERDQARDATCLIKASWILPAEFINKLGLKALEAIAYGMGSKLSSSSCLVTPYIHMEV 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11139g00003 864 CDD RRM_SF 320 387 - -
Mupr11139g00003 864 MobiDBLite consensus disorder prediction 201 229 - -
Mupr11139g00003 864 MobiDBLite consensus disorder prediction 496 707 - -
Mupr11139g00003 864 Gene3D - 319 401 IPR012677 -
Mupr11139g00003 864 MobiDBLite consensus disorder prediction 131 200 - -
Mupr11139g00003 864 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 415 497 IPR000504 GO:0003723
Mupr11139g00003 864 Coils Coil 112 135 - -
Mupr11139g00003 864 MobiDBLite consensus disorder prediction 590 604 - -
Mupr11139g00003 864 SUPERFAMILY RNA-binding domain, RBD 410 518 IPR035979 GO:0003676
Mupr11139g00003 864 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 172 318 - -
Mupr11139g00003 864 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 402 IPR000504 GO:0003723
Mupr11139g00003 864 Gene3D - 405 522 IPR012677 -
Mupr11139g00003 864 SMART rrm1_1 239 312 IPR000504 GO:0003723
Mupr11139g00003 864 SMART rrm1_1 416 491 IPR000504 GO:0003723
Mupr11139g00003 864 SMART rrm1_1 319 398 IPR000504 GO:0003723
Mupr11139g00003 864 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 308 IPR000504 GO:0003723
Mupr11139g00003 864 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 417 482 IPR000504 GO:0003723
Mupr11139g00003 864 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 386 IPR000504 GO:0003723
Mupr11139g00003 864 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 26 741 - -
Mupr11139g00003 864 MobiDBLite consensus disorder prediction 106 229 - -
Mupr11139g00003 864 MobiDBLite consensus disorder prediction 1 66 - -
Mupr11139g00003 864 FunFam RNA recognition water-stress protein1 405 526 - -
Mupr11139g00003 864 SUPERFAMILY RNA-binding domain, RBD 239 382 IPR035979 GO:0003676
Mupr11139g00003 864 Gene3D - 154 318 IPR012677 -
Mupr11139g00003 864 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 316 IPR000504 GO:0003723
Mupr11139g00003 864 CDD RRM_SF 240 311 - -
Mupr11139g00003 864 MobiDBLite consensus disorder prediction 116 130 - -
Mupr11139g00003 864 MobiDBLite consensus disorder prediction 41 66 - -
Mupr11139g00003 864 MobiDBLite consensus disorder prediction 564 579 - -
Mupr11139g00003 864 CDD RRM_SF 417 491 - -
Mupr11139g00003 864 FunFam Heterogeneous nuclear ribonucleoprotein Q 319 401 - -
Mupr11139g00003 864 MobiDBLite consensus disorder prediction 8 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11139g00003 Mupr-Chr11139 8790 15368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11139g00003 233 496 Eukaryotic Initiation Factors Gene Family AT1G49760 23.746 9.72e-16 79.7