Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11078g00001 ATGGGGCTTTGGATGAACATAGGGTTTGGGGGGGTTTTCTTTTCTCCACACTCGTCAGAAACTCGAAACCCTTGGCGGAAGCAAATGATGTCGTCGTCCTCATCAAGCCTCGGCTACGACGTGCCATGGATAGAGAAGTACCGACCCTCCAAGGTCGCCGACATAGTCGGCAACGACGACGCCGTCTCCAGACTCCTCGTCATCGCTCGCGACGGCAACATGCCCAATCTCATTTTATCCGGCCCTCCCGGGACCGGAAAAACCACCAGCATACTCGCCCTCGCGCAAGAACTTCTGGGCCCAAATTTCAAGGAAGCCGTTCTCGAACTAAACGCGTCGGACGATAGAGGAATCGATGTCGTGAGGAATAAGATCAAGATGTTTGCTCAGAAGAAAGTGACGCTCCCTCCGGGGCGGCACAAGATAGTGATATTGGATGAAGCTGATAGCATGACCTCGGGTGCACAGCAAGCGTTGAGAAGGACGATGGAGATATATTCTAACAGTACGCGGTTTGCTCTTGCTTGCAATACCTCGGCTAAGATTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATTTTCGCGATTATCTGATCAAGAGATACTTGGTCGCCTCATGGTTGTTATTCAAGCTGAGAAGGTTCCCTACGTTCCTGAAGGACTTGAAGCCATCATTTTCACTGCTGATGGTGATATGAGGCAGGGATTGAATAACTTGCAAGCAACATACAGCGGGTTCCAATTTGTTAACCAAGTAAATGTTTTCAAGGTATGTGACCAGCCGCATCCACTGCATGTGAAGAATATTGTGCGTAATGTGATTGAAGGGAATTTTGATGAAGCTTGCTCGGGCCTCAAACAATTGTATGACTTGGGATATTCCCCCACAGATATCATCACAACACTATTTCGTATAATAAAAAATTATGATATGGCTGAGTACCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGCTGTGTGGTCTATTGGCTAAGCTTTCTATAGTTCGTGAAACAGCTAAAGCTGTATGA 1080 0.4685 MGLWMNIGFGGVFFSPHSSETRNPWRKQMMSSSSSSLGYDVPWIEKYRPSKVADIVGNDDAVSRLLVIARDGNMPNLILSGPPGTGKTTSILALAQELLGPNFKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVIQAEKVPYVPEGLEAIIFTADGDMRQGLNNLQATYSGFQFVNQVNVFKVCDQPHPLHVKNIVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11078g00001 359 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 343 - -
Mupr11078g00001 359 CDD AAA 56 193 - -
Mupr11078g00001 359 Gene3D - 36 198 IPR027417 -
Mupr11078g00001 359 Pfam Replication factor C C-terminal domain 263 348 IPR013748 -
Mupr11078g00001 359 SUPERFAMILY post-AAA+ oligomerization domain-like 262 353 IPR008921 GO:0003677|GO:0006260
Mupr11078g00001 359 FunFam Replication factor C subunit 4 199 262 - -
Mupr11078g00001 359 FunFam Replication factor C subunit 4 35 198 - -
Mupr11078g00001 359 Pfam ATPase family associated with various cellular activities (AAA) 77 195 IPR003959 GO:0005524|GO:0016887
Mupr11078g00001 359 CDD HLD_clamp_RFC 198 260 - -
Mupr11078g00001 359 SMART AAA_5 73 199 IPR003593 GO:0016887
Mupr11078g00001 359 Gene3D - 199 262 - -
Mupr11078g00001 359 Gene3D - 263 355 - -
Mupr11078g00001 359 FunFam replication factor C subunit 2 263 355 - -
Mupr11078g00001 359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 257 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11078g00001 Mupr-Chr11078 1859 5815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11078g00001 38 358 Core DNA Replication Machinery Family AT1G63160 92.212 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11078g00001 K10755 - gmx:100781364 608.601