Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr11024g00001 ATGAAGCCCGAGTTGTACGAAATCTCCGACGACGAGTGGGAGAACCACTCCTTCAAACCCTCCCGAGTTCTCAAACGACCTCGCACTTCTTCTCCTCCTTCCTCTCCGCCACCTATCGAATCCTTCGCTTATACCCCTAAGGTCGACGTTTCCAGCGAAAACGACAGCGATTGCGTCGAAATCGCGCCAAATTTTCGCGAAAACCTCGAGGACCTGGAGGACGCTGACGTAGACGACAACGCCGGCGCCGGTTGCGCGGCGGCGGCGTCCCGCGGCCGGCGGTTTATAATTGACGAGGACGACGAGGACGGCGAGGAGAACGGCGAAAGGAACAGGAACGTCGCGGAGTTGTATGAGGTAGTGTTGAGCGAGGAGGAGGAGGAAGAGGTTGAAGAAGAATTGAACGAAGACGACGTGGTAGGTAGGGCTTTGCACAAGTGCGCCAGAATATCTGCGGAGTTGAAGGGCGAACTCTTCGGTTCTTCGGGGACCGCGTGCGAGAGGTATTCGGAGGTGGAGTCTTCGTCAGTGAGAATCGTCACTCAGGAGGATGTTGATGTTGCGTGCGAGTCTGAGGATTCGGATTTTCAGCCTCTGCTCAAGCCGTATCAGTTGGTTGGTGTCAATTTTTTGCTTCTGTTGTATCGGAAGGGGATTGGAGGAGCCATATTAGCAGATGAAATGGGCCTTGGCAAAACAGTTCAGGCCATCACATATTTAACTTTGTTGAAACCCTTGCACAATGATTCTGGACCACATCTTATAGTGTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAAAGGTGGTGTCCATCCTTTTCTGTTCTTCAATATCATGGGGCTGGACGTGCAGCATACTGCAAGGAGTTGAACTCCCTGTCCAAGGCTGGATTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGCAAAATCCTGAAGCGATGGAGGTGGAGCTGTGTGCTGATGGATGAGGCTCATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCGAACCAACGTTTGATGCTGACAGGGACACCACTTCAGAATGATTTACATGAGTTATGGTCATTGTTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGATGTTGACCTAAAAAAGTTACTAAATGCAGAAGACAGAGATTTAATTGGTCGTATGAAGTCCATCTTAGGGCCATTTATTTTGCGGCGACTGAAATCTGATGTGATGCAACAACTTGTTCCAAAAATACAGCAGGTTGAATATGTTATAATGGAAAGGCAGCAGGAAACTGCTTACAAGGAAGCCATTGAAGATTATCGTGCTGTTTCACAAGCTCGGATGGCAAAATGTTCTGAGCTTAATTCAAAAAATGTTCATGAAGTTCTACCTCGGCGACAAATAAATAACTATTTTGTTCAGTTCCGCAAGATTGCAAACCATCCCTTGTTAATAAGGCGAATCTACAATGATGAGGATGTCATTCGCTTTGCTAGGAAGCTACATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGAGGAACTTAGAAGTTACAATGACTTCTCTATTCACCGGCTTTTACTTCATTATGGGGTCAATGATAGAAAGGGGATCCTTCCAGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCACTAAAGGAGGGTGGTCATCGAGCCTTGATCTTTAGTCAATGGACTTCAATGCTTGACATTTTGGAATGGACATTGGATGTCATTGGATTGACCTATAAACGGCTTGATGGAAGTACACAGGTAGCGGAGAGGCAAACAATAGTTGATACGTTCAACAACGATAGTTCAATATTTGCATGCTTACTTTCTACGAGAGCTGGTGGACAGGGCTTAAACTTAACAGGAGCTGATACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGACAAGCAGAAGATCGTTGCCATCGAATCGGTCAAACAAAGCCTGTAACCATATATCGGCTGGTGACAAAGGGAACTGTTGATGAAAATGTGTACGAGATTGCGAAAAGAAAGCTAGTATTAGATGCTGCTGTTCTCGAGTCAATGGAAGAGATTAATGAAGGTGACATGCCGGAGAAGACCATGGGAGAGATATTGTCCTCAATTTTATTAATTCAAGCTCCGCCTCATCTTATCATAATGTCCGATGAGGATACTCCTCAAAAGTTTCCTTCGAGGCCTTTCAAT 2319 0.4515 MKPELYEISDDEWENHSFKPSRVLKRPRTSSPPSSPPPIESFAYTPKVDVSSENDSDCVEIAPNFRENLEDLEDADVDDNAGAGCAAAASRGRRFIIDEDDEDGEENGERNRNVAELYEVVLSEEEEEEVEEELNEDDVVGRALHKCARISAELKGELFGSSGTACERYSEVESSSVRIVTQEDVDVACESEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKPLHNDSGPHLIVCPASVLENWERELKRWCPSFSVLQYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMERQQETAYKEAIEDYRAVSQARMAKCSELNSKNVHEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPIGAFGFECTLDRVIEELRSYNDFSIHRLLLHYGVNDRKGILPDKHVMLSAKCRALAELLPSLKEGGHRALIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNDSSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGDMPEKTMGEILSSILLIQAPPHLIIMSDEDTPQKFPSRPFN 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr11024g00001 773 Pfam SNF2-related domain 220 506 IPR000330 GO:0005524|GO:0140658
Mupr11024g00001 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 213 391 IPR014001 -
Mupr11024g00001 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 730 IPR027417 -
Mupr11024g00001 773 Gene3D - 548 751 IPR027417 -
Mupr11024g00001 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 426 IPR027417 -
Mupr11024g00001 773 Gene3D - 174 450 IPR038718 -
Mupr11024g00001 773 PANTHER SNF2/RAD54 HELICASE FAMILY 104 726 - -
Mupr11024g00001 773 SMART ultradead3 196 401 IPR014001 -
Mupr11024g00001 773 FunFam Protein CHROMATIN REMODELING 19 isoform A 171 449 - -
Mupr11024g00001 773 MobiDBLite consensus disorder prediction 1 21 - -
Mupr11024g00001 773 CDD SF2_C_SNF 566 699 - -
Mupr11024g00001 773 CDD DEXHc_Snf 200 393 - -
Mupr11024g00001 773 MobiDBLite consensus disorder prediction 1 43 - -
Mupr11024g00001 773 Pfam Helicase conserved C-terminal domain 576 688 IPR001650 -
Mupr11024g00001 773 SMART helicmild6 605 688 IPR001650 -
Mupr11024g00001 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 579 746 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr11024g00001 Mupr-Chr11024 5090 21289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr11024g00001 221 727 RAD5 or RAD16-like Gene Family AT5G22750 27.053 1.74e-47 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr11024g00001 SNF2_N 2e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr11024g00001 K14439 - gmx:100806323 1283.09