Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr109g00005 ATGGGAGGTGACGCTGCCGCCGCTGAGAGTGCCACGACGGAATCGAACGCCGCCGCCGGAGTTAACATCAACATTCGTTGCTCCAATGGTTCTAAGTTTTCCGTTCAGATTAGCCTCGATTCTATCGTCAGATCCTTCAAGGATGTTGTTGCTCGCAACTGCGACATCCCCGCCGATCAACAGCGTCTGATTTACAAGGGTCGGATCCTTAAGGATGATCAAACCCTCCAAAGCTACGGTTTGGAGGCAGATCACACTGTCCACTTGGTTCGTGGCTTTGCTCCTTCCAACACCACTGGTGGGACTAATAGTAGTGGTCCCAATACCACAACAGCTAACACGAGAGGTGCTGGTGCTAATGAGGGTGGGGGTTTAGGAGGACCAGGATTTGGAGCTTCGCTGTTCCCTGGACTTGGTGGGAATGGGATGGGGGGAAGTAACATCAATGGCTTATTTGGAGCGGGCTTTCCAGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATTTAGTGAGAGATATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCGGAGATAGTGCGTAATCTTATAATGAATAACCCGCAGATGCAAGAGCTAATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCCAGCACTCTTCGTCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCCTTTTTAAATGCCACTACGATGGCTGGTAACACAGGAAGTGATGGTGCAGCAGTCAGGAACCAATCAACTAATCCTTCGACTACTAATTCTGAAGCCACTTCCCCTGTACCCAATACTAATCCACTTCCTAATCCTTGGTCCGCTACTGGAACTGGAACTGGAGGCGCCCAAAATAACACCAGAAGGTCAACAACTACTGGTGGGGATGCTCGACAGCAGACACCCACTGGCTTAGGAGGGCTTGGACTGCCAGATCTTGAAGGCATGTTGGGTGGGATGCCAGATGCTGCTATGTTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGTGCCAATACTGAGCAGCGTGGCATGCCTGATTTAAATTCTCTGAGGGAGGTGATGCAAAACCCAGAGTTTCTTCGCCTGTTTTCCTCACCCGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAACCAACACAGGAACCAGGCCAAACAGGTGGAGGCACTGGACCGATGAACAACTTGGGGCTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTGGCTGTTCCTAACAGATCAAATGAGCCCCCAGAGCAATTGTATGCCACCCAACTTTCTCAGCTTCAAGAGATGGGGTTCTTTGACACTCAAGAGAACATAAGGGCTCTTATTGCTACATCCGGGAACGTTCATGCTGCAGTTGAGCGGCTTTTGGGGAACTCCGGACAGTAG 1617 0.483 MGGDAAAAESATTESNAAAGVNINIRCSNGSKFSVQISLDSIVRSFKDVVARNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSNTTGGTNSSGPNTTTANTRGAGANEGGGLGGPGFGASLFPGLGGNGMGGSNINGLFGAGFPDLEQMQQPFLSNPNLVRDIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGSDGAAVRNQSTNPSTTNSEATSPVPNTNPLPNPWSATGTGTGGAQNNTRRSTTTGGDARQQTPTGLGGLGLPDLEGMLGGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGANTEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQPTQEPGQTGGGTGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr109g00005 538 FunFam Ubiquitin domain-containing protein DSK2b 479 537 - -
Mupr109g00005 538 MobiDBLite consensus disorder prediction 94 123 - -
Mupr109g00005 538 MobiDBLite consensus disorder prediction 274 342 - -
Mupr109g00005 538 MobiDBLite consensus disorder prediction 444 461 - -
Mupr109g00005 538 FunFam Ubiquitin domain-containing protein DSK2b 196 252 - -
Mupr109g00005 538 SUPERFAMILY UBA-like 492 534 IPR009060 GO:0005515
Mupr109g00005 538 Gene3D - 194 252 - -
Mupr109g00005 538 FunFam Ubiquitin domain-containing protein DSK2b 18 104 - -
Mupr109g00005 538 Gene3D - 7 106 - -
Mupr109g00005 538 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Mupr109g00005 538 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Mupr109g00005 538 SMART ubq_7 21 92 IPR000626 GO:0005515
Mupr109g00005 538 MobiDBLite consensus disorder prediction 444 463 - -
Mupr109g00005 538 CDD UBA_PLICs 496 534 - -
Mupr109g00005 538 MobiDBLite consensus disorder prediction 274 353 - -
Mupr109g00005 538 MobiDBLite consensus disorder prediction 94 117 - -
Mupr109g00005 538 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 490 535 IPR015940 -
Mupr109g00005 538 Pfam UBA/TS-N domain 496 532 IPR015940 -
Mupr109g00005 538 SMART uba_6 496 534 IPR015940 -
Mupr109g00005 538 SMART CBM 145 186 IPR006636 -
Mupr109g00005 538 SMART CBM 397 432 IPR006636 -
Mupr109g00005 538 SMART CBM 352 394 IPR006636 -
Mupr109g00005 538 SMART CBM 199 238 IPR006636 -
Mupr109g00005 538 CDD Ubl_Dsk2p_like 21 93 - -
Mupr109g00005 538 Gene3D - 478 538 - -
Mupr109g00005 538 PANTHER UBIQUILIN 16 533 IPR015496 -
Mupr109g00005 538 SUPERFAMILY Ubiquitin-like 15 108 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr109g00005 Mupr-Chr109 68039 73638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr109g00005 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 7.18e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr109g00005 K04523 - gmx:100797539 856.284