Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10996g00003 ATGTCTTTCATGGTTTTGTTAGGGCTTATTTTGAGCTTTTCCTCTGGTCCTATTAATTTCCTACTTCTGAGTACAAATGTTCAGAAAAGGAGAATTTATGACATTACAAATGTACTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGAAGACCAAGTTAATAGTCTAAAGGCTGAAGTTGAAAGTCTATATGCTGAGGAATGTGAACTTGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGACAAAGAAAGCTCTCAAAAGTACCTTTTTTTGACGAAGGAAGACATTCTTAGTCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAAGCTCCAAAAGCTAGTTTCATTGAGGTTCCTGATCCTGATGAGGAATTAGGTTTCGACCAAAGACAGTACACAATGATTGTTAGAAGTGCCACTGGTCCAATATATCTGTACCTCTTGAGCAATGACGACGGCAAATTTGAGGATGATAGTGTCAAGCGGGTGAAATTAATGAATTCATCGTGGAATTGTAATCACTACAGAAAGGGGGGTGTGGGATTATTACAGAGCGAAGATGATAATAAAAATCCTTCTGAGAGTTTCAGTTTGCAGGGGTCACAAGCATTTGGGATTCAAGAAATTACTCCCACGAGTTTTGAAATAGAAGATGACTACTGGTTTCAATCAGATCCTGCAGTGAGCCTAACAGAATTGTGCAAATGA 780 0.3859 MSFMVLLGLILSFSSGPINFLLLSTNVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELEDQVNSLKAEVESLYAEECELDDCIRKKQELLRNLEDKESSQKYLFLTKEDILSLPCFQNQEIIAIKAPKASFIEVPDPDEELGFDQRQYTMIVRSATGPIYLYLLSNDDGKFEDDSVKRVKLMNSSWNCNHYRKGGVGLLQSEDDNKNPSESFSLQGSQAFGIQEITPTSFEIEDDYWFQSDPAVSLTELCK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10996g00003 259 Coils Coil 87 107 - -
Mupr10996g00003 259 SMART E2F_TDP_2 2 57 IPR003316 GO:0005667|GO:0006355
Mupr10996g00003 259 CDD E2F_DD 68 175 IPR032198 GO:0046983
Mupr10996g00003 259 SUPERFAMILY E2F-DP heterodimerization region 68 175 IPR037241 -
Mupr10996g00003 259 SUPERFAMILY "Winged helix" DNA-binding domain 23 58 IPR036390 -
Mupr10996g00003 259 Gene3D - 64 175 - -
Mupr10996g00003 259 Pfam E2F/DP family winged-helix DNA-binding domain 26 57 IPR003316 GO:0005667|GO:0006355
Mupr10996g00003 259 PANTHER TRANSCRIPTION FACTOR E2F 26 257 IPR015633 GO:0000978|GO:0006357
Mupr10996g00003 259 Gene3D - 12 59 IPR036388 -
Mupr10996g00003 259 Pfam E2F transcription factor CC-MB domain 73 172 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10996g00003 Mupr-Chr10996 13273 15784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10996g00003 18 257 E2F-DP Transcription Factor Family AT1G47870 49.793 4.74e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mupr10996g00003 E2F_CC-MB 1.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10996g00003 K06620 - gmx:100797301 402.519