Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1098g00002 ATGCCACTTTGTTGGAAGTGGGGTCTTCTGGCTAGGGTTTCTGGTTCTGGAATGTTTGCCACTTCTTTCTACCACTACCTGCAGTTTCTTCTCTTCTTCAACTTTAACCTGAAAATTTTTGGTGAGTTTTGCTCTTCTCTGTGTTCCTTCACCTATGCTGAAAGCAAAGACCTCTTTCTATGCTCACACCTACAGAGTGCTTCAATAGATGAGATGGTGAGGGGAAAGATTCAAATGAAGAAAATTGAGAATGCAACAAGCCGTCAAGTGACCTTTTCAAAGCGACGAAGTGGTCTTCTAAAGAAAGCTTACGAGCTATCCGTTCTTTGTGATGCCGAAGTAGCTGTCATAGTCTTCTCACAGAATGGAAGGCTCTATGAATTCTCAAGTTCTGAGTACATTTTTCTTCACTATTCTAATTCTGATATGTTTTGA 435 0.4069 MPLCWKWGLLARVSGSGMFATSFYHYLQFLLFFNFNLKIFGEFCSSLCSFTYAESKDLFLCSHLQSASIDEMVRGKIQMKKIENATSRQVTFSKRRSGLLKKAYELSVLCDAEVAVIVFSQNGRLYEFSSSEYIFLHYSNSDMF 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1098g00002 144 PRINTS MADS domain signature 94 109 IPR002100 GO:0003677|GO:0046983
Mupr1098g00002 144 PRINTS MADS domain signature 74 94 IPR002100 GO:0003677|GO:0046983
Mupr1098g00002 144 PRINTS MADS domain signature 109 130 IPR002100 GO:0003677|GO:0046983
Mupr1098g00002 144 ProSiteProfiles MADS-box domain profile. 72 132 IPR002100 GO:0003677|GO:0046983
Mupr1098g00002 144 SMART madsneu2 72 131 IPR002100 GO:0003677|GO:0046983
Mupr1098g00002 144 CDD MADS_MEF2_like 74 140 IPR033896 GO:0000977|GO:0045944
Mupr1098g00002 144 ProSitePatterns MADS-box domain signature. 74 128 IPR002100 GO:0003677|GO:0046983
Mupr1098g00002 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 81 128 IPR002100 GO:0003677|GO:0046983
Mupr1098g00002 144 SUPERFAMILY SRF-like 74 132 IPR036879 GO:0003677|GO:0046983
Mupr1098g00002 144 Gene3D - 84 142 IPR036879 GO:0003677|GO:0046983
Mupr1098g00002 144 PANTHER SERUM RESPONSE FACTOR HOMOLOG 74 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1098g00002 Mupr-Chr1098 4425 7552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1098g00002 72 132 MADS-box Gene Family AT5G62165 85.246 4.76e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr1098g00002 SRF-TF 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1098g00002 - - ccaj:109812709 122.864