Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10890g00011 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGCCAACACCTCTTAGGTGAAAACATCTCAGACTCCTCCCTCACCAACCTCCACCCTGTAAAACTAGAAGACCCCTCATCACCAGAATTTGATTTCACTTCATATATTTCAGACCACAGCAGCTTCTTCTCTTTCCTTGAAGGCTATGATTTGGTAGCAGACATGGAGTTTGTTGATCACAAGGCACTCAAGTCCAATGGAACCATCAGCATCCCCTCAAAGGAGCAAAAGAAATGCAATTCTCCTGAACCAATGGAACCACAAGAGAAGGCAAAGAAGTCAGAATATGATGAGGCAAAGCGTTATAGGGGGGTTAGGAGAAGGCCTTGGGGCAAGTTTGCTGCTGAAATCCGTGACCCTACAAGAAAAGGGACAAGGGTTTGGCTTGGCACTTTTGACTCTGAAATTGATGCTGCTAAGGCTTATGATCGTGCTGCTTTCAAGATGAGGGGTCAGAAGGCCATTTTGAACTTCCCTCTTGAGGCTGGAGAGTCTGATCCAAAGCCTAACACTTGTGGCAGGAAAAGGAGAAGAGAGACCCTTGGATTGAACCTGCCACAACAAGTCCAAGTTCACCATGATTTTTAA 627 0.453 MTTAEETSNLDLIRQHLLGENISDSSLTNLHPVKLEDPSSPEFDFTSYISDHSSFFSFLEGYDLVADMEFVDHKALKSNGTISIPSKEQKKCNSPEPMEPQEKAKKSEYDEAKRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDRAAFKMRGQKAILNFPLEAGESDPKPNTCGRKRRRETLGLNLPQQVQVHHDF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10890g00011 208 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Mupr10890g00011 208 PANTHER DNA-BINDING DOMAIN 90 180 IPR044808 GO:0003700|GO:0009873
Mupr10890g00011 208 Pfam AP2 domain 114 164 IPR001471 GO:0003700|GO:0006355
Mupr10890g00011 208 SUPERFAMILY DNA-binding domain 114 174 IPR016177 GO:0003677
Mupr10890g00011 208 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Mupr10890g00011 208 PRINTS Ethylene responsive element binding protein signature 154 174 IPR001471 GO:0003700|GO:0006355
Mupr10890g00011 208 MobiDBLite consensus disorder prediction 92 109 - -
Mupr10890g00011 208 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Mupr10890g00011 208 MobiDBLite consensus disorder prediction 85 109 - -
Mupr10890g00011 208 Gene3D AP2/ERF domain 113 174 IPR036955 GO:0003700|GO:0006355
Mupr10890g00011 208 CDD AP2 113 172 IPR001471 GO:0003700|GO:0006355
Mupr10890g00011 208 FunFam Ethylene-responsive transcription factor 2 113 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10890g00011 Mupr-Chr10890 29470 30796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10890g00011 1 191 AP2-EREBP Transcription Factor Family AT5G07580 39.614 3.33e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mupr10890g00011 AP2 7.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10890g00011 - - ccaj:109813158 350.517