Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10888g00003 ATGGATGAATACTACTGTCGTGCGTACCCACACAGATTCGTCTGTGCCACACAAATTCCATTATGGATCCACAATGAGCAAGTCTTCAACATAGAGTTTGAATATGTAAACATGTACATATTGAATGCTAGGAAATTCCGCGCGGAAAGTCAAACTACATATCACAGGTTTGGAAACATCTCAAGGGACAAAATGATGCAAGAAACAAGCATCGTGTCTTGGCTTTCCCGCATTGGTGTGCCCAGAGACGCTCACGAGATCGTGGTGGCAGAAGTGTTGGAATGCGCGCGCGCCATGGCTAACAATAATTCAACTCTTTCAGAGATTCTATCCATGCGCGTGGATCTGTTTGTCACTCGAGCCAGCAACGATGAAACGAGGGAAAAAGAAACGAGCGACGATGATGAAACGACTGAAAATGAAACGAGGGATGATGATGAAACGAGGGACGATGATGAAACGAGGGACGATGATGAAACTAGGGACGATGATGAAACGAAGGACGATGATGAAACTAGGGACGATGATGAAACGAGGGACGATGATGAAACTAGGGACGATGATGAAACGAGTGACGATGATGACGATGAGGATGACAATTACGACACTGATGATGATTTTGAAGAAGACGAAGATGATGGGTTGGTGCCAGCGGCTAAGTCATTCGTTCAGGGGTTAAAGATGGCTGAACACAAAGAGTCTATGAAGGAAAGGTGTGCCATTTGTTTCGACGATTTTCTTTTCGGCGTTCATCTGCCTTGTTCGCACATGTTTCATGAAAACTGCATCTTAGATTGGTTGGGCGTAGCCAATTCTTGCCCTTTGTGTCGTTTTCAGATGCCTACTGATTGA 852 0.4495 MDEYYCRAYPHRFVCATQIPLWIHNEQVFNIEFEYVNMYILNARKFRAESQTTYHRFGNISRDKMMQETSIVSWLSRIGVPRDAHEIVVAEVLECARAMANNNSTLSEILSMRVDLFVTRASNDETREKETSDDDETTENETRDDDETRDDDETRDDDETRDDDETKDDDETRDDDETRDDDETRDDDETSDDDDDEDDNYDTDDDFEEDEDDGLVPAAKSFVQGLKMAEHKESMKERCAICFDDFLFGVHLPCSHMFHENCILDWLGVANSCPLCRFQMPTD 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10888g00003 283 SMART ring_2 239 276 IPR001841 -
Mupr10888g00003 283 MobiDBLite consensus disorder prediction 123 215 - -
Mupr10888g00003 283 SUPERFAMILY RING/U-box 238 281 - -
Mupr10888g00003 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 144 281 - -
Mupr10888g00003 283 ProSiteProfiles Zinc finger RING-type profile. 239 277 IPR001841 -
Mupr10888g00003 283 MobiDBLite consensus disorder prediction 129 213 - -
Mupr10888g00003 283 Pfam Ring finger domain 238 277 IPR001841 -
Mupr10888g00003 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 283 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10888g00003 Mupr-Chr10888 16781 17632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10888g00003 174 281 C3H Transcription Factor Family AT1G14200 35.965 5.42e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10888g00003 - K11982 mtr:11431540 122.094