Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10877g00001 ATGGGGGATCAGGGTGTTTTAGGTGTTAATGTTTGGAGAGAGGAAGAGGAGGATGAGTTTTGCAGTTGTTGTGGAGATGAAGATGAGGAAGTGTGGAAGGAGACTGAGGAGCCTGTGGTGGAAGGGTTGAAGGATGAGCTTGATGAATTTTCAGTGAAAATGTTCTTTAAGGGGTTGTCAATGGCTGGGGTTGAAAATTCAAGTTCTGGGTTTTCTGGAATTGGAGTGGTCATGGAAAGGTCATCAGGTCTTCCTGTTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCGGAGGAGTCTGTGATTGACTATTTGGCACTCTTAAATGGGTTGCTGGAAGCTGTGCAGCACAAGATCCGCAGGGTTTATGCTTTCACTGATTCTGAGTTGTTGCACGACCAGATTACATTTGGGAAAAAATTGGAGATGCCTCTTTTGACGGCACTGAGAGAAAGGATTCTGGAACTTGCCAATAATTTTGAAGACTTTGTTTTGAAGCTTATACCCACAACTGATCTTGAGCAGCCATTGCATTTGGCCAAAGTAGCTATTGGAGTTGTCACTTTCCCTGTAAATGGTGAGAAATTGCTTAAGAACTGTTCTATTTGTTGTGATGACAAGCCAGTGCCAATCATGATTACCTTGAAGTGTTCACACACATTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGTAAAGTACAATCTTGTCAAGTCCCTATAAGATGCCCTCAACCAGGATGCAAGTATTGCATCTCAGCAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTGAATCACTGGAGAAAGCCCTTTCAGAAGCAGATATTGACCATTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTTCTTGATCCCCATGAATGTTTATCGGCTAGGGCCAGTTCATCTAGTCAGTCTGACAATTCTTGTATCGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTGGACTGTAAGGTTCCGTGGCATTCTTCTCTGAGCTGTGTAGAATACCAGAATCTGCCAGAGGAGGAGAGAGATGCTTCTGACATTACCTTGCATCGTCTTGCTCAGAATAAAAGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCGGAATACCATGATGGGCAACAGACATGTCAGTGTGCATATTGGGAAGAAGATAACTCGGAAGACTCCGTGGTGCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAACTCTCTCTCCATGATCGTGGATGCATACTCCGATCAAGAACGATCGCAACTAGCGCTTATTCAAAGGTTCCTAGCTGGAGGTTTCAGCCTCAGTGACCATAATCCTTACCAATCTCCTCCGCGCTGTACAGACTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGGTTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTACATTCAATGA 1476 0.4377 MGDQGVLGVNVWREEEEDEFCSCCGDEDEEVWKETEEPVVEGLKDELDEFSVKMFFKGLSMAGVENSSSGFSGIGVVMERSSGLPVIRVQKKLDFYAEESVIDYLALLNGLLEAVQHKIRRVYAFTDSELLHDQITFGKKLEMPLLTALRERILELANNFEDFVLKLIPTTDLEQPLHLAKVAIGVVTFPVNGEKLLKNCSICCDDKPVPIMITLKCSHTFCSHCLRAYADGKVQSCQVPIRCPQPGCKYCISATECRSFLPFTSFESLEKALSEADIDHSDRIYCPFPNCSVLLDPHECLSARASSSSQSDNSCIECPVCQRFICVDCKVPWHSSLSCVEYQNLPEEERDASDITLHRLAQNKRCGHEFCYSCGAEYHDGQQTCQCAYWEEDNSEDSVVHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10877g00001 491 FunFam RBR-type E3 ubiquitin transferase 195 280 - -
Mupr10877g00001 491 FunFam RBR-type E3 ubiquitin transferase 52 186 - -
Mupr10877g00001 491 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 127 366 IPR031127 GO:0004842|GO:0016567
Mupr10877g00001 491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 282 IPR013083 -
Mupr10877g00001 491 ProSiteProfiles TRIAD supradomain profile. 196 412 IPR044066 -
Mupr10877g00001 491 CDD BRcat_RBR_unk 281 342 - -
Mupr10877g00001 491 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Mupr10877g00001 491 Pfam IBR domain, a half RING-finger domain 275 339 IPR002867 GO:0008270
Mupr10877g00001 491 Gene3D - 54 186 IPR036397 GO:0003676
Mupr10877g00001 491 SUPERFAMILY RING/U-box 198 275 - -
Mupr10877g00001 491 SMART ibrneu5 267 339 IPR002867 GO:0008270
Mupr10877g00001 491 SUPERFAMILY Ribonuclease H-like 67 169 IPR012337 -
Mupr10877g00001 491 ProSiteProfiles Zinc finger RING-type profile. 200 244 IPR001841 -
Mupr10877g00001 491 Pfam Reverse transcriptase-like 63 169 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10877g00001 Mupr-Chr10877 9547 14892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10877g00001 25 376 C3H Transcription Factor Family AT2G19610 23.426 9.16e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10877g00001 - - gmx:100783040 919.457