Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10871g00002 ATGAGTTTCTTGCAGGGAATCATTGATTCCTTTAACTCCATATTCATACCCGATAATAATAATAATTATATCAATACTAATTCTTCTTCTTCTTCTTCGGATCGAATGGAAGCTCCTCCTCCTTCGGTTTCGAACGAGCGCGTGGCTTACAAGCTGAAAGGTTACTTCGATTTGGCGACGCAGGAGATCGCGAAGGGCGTTAGGGCAGAGGAATGGGGTTTGATCGACGACGCGCTTCTTCACTACCGGAACGCGCACTCGATCCTCGTCGAAGCTAATTCAACTCCCGTTCCTTCCTACATCACTTCCAGTGAGCAACAGAAGGTGCAGTCATATCGTGAGAAGATATCCAAATGGCAGAGTCAAGTTACTGAGAGATTGCAGACTCTCACTAGACGAGCTGGTAGCTCATCTGCCAATCAGAGCACTTCAAACCTTGCACAAACTGCTGCAGTTCCGATTAAGCCATTGAGTACTAGAAAAAATGTGTTACAAAAGCCCCCTCAAAGAACAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCTAGTCAAGCGCCTGCTGCAAATTATGATGCCAAACTAGTTGAAATGATTAACACTGCCATAGTAGACAGAAGTCCTTCTGTTAGATGGGAAGATTGTGGAAATGCAGCTGGGCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTATTCACTGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTTTTTGGTCCGCCTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCTTCAGAATCACAAGCAACATTTTTTAATGTCACAGCAGCTTCCTTGACTTCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGATGGCAAATGAGAATGAAGCCAGCAGACGATTAAAATCCGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGGCTGGTAAAGAGAATATACATACCTTTACCAGATGACAATGTTCGGAAGCTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGAGGCTTGTAAAAGAGACAGAAGGATATTCTGGCAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGCGCTAACATTCTTACTGTAAGAGGACTGAGATACGAGGATTTTAAGAAGGCCATGGCTATCATCAGGCCAAGTTTAAACAAAAGTAAGTGGGAAGAGCTTGAGCGCTGGAATGAAGAATTTGGCTCTAACTGA 1446 0.4329 MSFLQGIIDSFNSIFIPDNNNNYINTNSSSSSSDRMEAPPPSVSNERVAYKLKGYFDLATQEIAKGVRAEEWGLIDDALLHYRNAHSILVEANSTPVPSYITSSEQQKVQSYREKISKWQSQVTERLQTLTRRAGSSSANQSTSNLAQTAAVPIKPLSTRKNVLQKPPQRTGQVNKVGSPKSSQAPAANYDAKLVEMINTAIVDRSPSVRWEDCGNAAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRMANENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPDDNVRKLLLKHKLKGQAFSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGANILTVRGLRYEDFKKAMAIIRPSLNKSKWEELERWNEEFGSN 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10871g00002 481 SMART smart 52 129 IPR007330 -
Mupr10871g00002 481 CDD RecA-like_spastin 218 379 - -
Mupr10871g00002 481 PANTHER AAA DOMAIN-CONTAINING 109 480 - -
Mupr10871g00002 481 Pfam AAA+ lid domain 406 437 IPR041569 -
Mupr10871g00002 481 FunFam AAA-type ATPase family protein 45 134 - -
Mupr10871g00002 481 Gene3D - 44 134 - -
Mupr10871g00002 481 SMART AAA_5 247 383 IPR003593 GO:0016887
Mupr10871g00002 481 MobiDBLite consensus disorder prediction 162 186 - -
Mupr10871g00002 481 Gene3D - 382 459 - -
Mupr10871g00002 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 478 IPR027417 -
Mupr10871g00002 481 FunFam Spastin, putative 207 394 - -
Mupr10871g00002 481 Pfam ATPase family associated with various cellular activities (AAA) 251 381 IPR003959 GO:0005524|GO:0016887
Mupr10871g00002 481 ProSitePatterns AAA-protein family signature. 353 372 IPR003960 GO:0005524|GO:0016887
Mupr10871g00002 481 MobiDBLite consensus disorder prediction 161 186 - -
Mupr10871g00002 481 CDD MIT_spastin 52 130 - -
Mupr10871g00002 481 FunFam AAA-type ATPase family protein 382 459 - -
Mupr10871g00002 481 Gene3D - 207 475 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10871g00002 Mupr-Chr10871 11330 18168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10871g00002 207 462 Calmodulin-binding Proteins AT3G56690 39.245 2.67e-45 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10871g00002 K13254 - gmx:100780946 847.04